Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:69774790-70214892

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdkl1 12 69746848 to 69791267 44419 - protein coding gene cyclin-dependent kinase-like 1 (CDC2-related kinase)
Tssr116527 12 69790255 to 69790273 18 - TSS region transcription start site region 116527
Tssr116528 12 69790274 to 69790276 2 - TSS region transcription start site region 116528
Tssr116529 12 69790281 to 69790298 17 - TSS region transcription start site region 116529
4930512B01Rik 12 69790288 to 69840479 50191 + lncRNA gene RIKEN cDNA 4930512B01 gene
Cpgi4702 12 69790472 to 69791400 928 CpG island CpG island 4702
Tssr116530 12 69790605 to 69790631 26 - TSS region transcription start site region 116530
Tssr116531 12 69790660 to 69790735 75 - TSS region transcription start site region 116531
Tssr116532 12 69791229 to 69791293 64 - TSS region transcription start site region 116532
Tssr116533 12 69791294 to 69791295 1 - TSS region transcription start site region 116533
Tssr116534 12 69791311 to 69791323 12 - TSS region transcription start site region 116534
Tssr116535 12 69791325 to 69791338 13 - TSS region transcription start site region 116535
Tssr116536 12 69791353 to 69791364 11 - TSS region transcription start site region 116536
D12Mit34 12 69799852 to 69800022 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 34
Lnopy2 12 69799852 to 69800022 170 QTL lens opacity 2
Map4k5 12 69803757 to 69893170 89413 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 5
Gm18030 12 69819647 to 69820377 730 + pseudogene predicted gene, 18030
Tssr113655 12 69843669 to 69843695 26 + TSS region transcription start site region 113655
4931403G20Rik 12 69847635 to 69853671 6036 + lincRNA gene RIKEN cDNA 4931403G20 gene
Cpgi4703 12 69892325 to 69893543 1218 CpG island CpG island 4703
Tssr116537 12 69892779 to 69892792 13 - TSS region transcription start site region 116537
Tssr116538 12 69892989 to 69893082 93 - TSS region transcription start site region 116538
Atl1 12 69893105 to 69964085 70980 + protein coding gene atlastin GTPase 1
Tssr116539 12 69893134 to 69893151 17 - TSS region transcription start site region 116539
Tssr116540 12 69893162 to 69893176 14 - TSS region transcription start site region 116540
Tssr113656 12 69893221 to 69893276 55 + TSS region transcription start site region 113656
Tssr113657 12 69907734 to 69907745 11 + TSS region transcription start site region 113657
Tssr113658 12 69907747 to 69907754 7 + TSS region transcription start site region 113658
Tssr113659 12 69907793 to 69907808 15 + TSS region transcription start site region 113659
Tssr113660 12 69907817 to 69907826 9 + TSS region transcription start site region 113660
Tssr113661 12 69907828 to 69907843 15 + TSS region transcription start site region 113661
Cpgi4704 12 69907848 to 69908862 1014 CpG island CpG island 4704
Tssr113662 12 69907853 to 69907863 10 + TSS region transcription start site region 113662
Tssr113663 12 69907882 to 69907889 7 + TSS region transcription start site region 113663
Tssr113664 12 69907900 to 69907910 10 + TSS region transcription start site region 113664
Tssr113665 12 69907937 to 69907940 3 + TSS region transcription start site region 113665
Gm6316 12 69920472 to 69921491 1019 - pseudogene predicted pseudogene 6316
Tssr113666 12 69930903 to 69930906 3 + TSS region transcription start site region 113666
Gm22058 12 69930904 to 69931213 309 + unclassified non-coding RNA gene predicted gene, 22058
Tssr113667 12 69946142 to 69946159 17 + TSS region transcription start site region 113667
Tssr113668 12 69946169 to 69946193 24 + TSS region transcription start site region 113668
Gm3086 12 69963409 to 69969736 6327 + pseudogene predicted gene 3086
Tssr113669 12 69963412 to 69963440 28 + TSS region transcription start site region 113669
Tssr113670 12 69963452 to 69963474 22 + TSS region transcription start site region 113670
Sav1 12 69965012 to 69987002 21990 - protein coding gene salvador family WW domain containing 1
Gm19144 12 69970894 to 69972541 1647 + pseudogene predicted gene, 19144
Tssr116541 12 69976126 to 69976139 13 - TSS region transcription start site region 116541
Tssr116542 12 69979060 to 69979082 22 - TSS region transcription start site region 116542
Gm19221 12 69980886 to 69982468 1582 + pseudogene predicted gene, 19221
Tssr116543 12 69982741 to 69982744 3 - TSS region transcription start site region 116543
Tssr113671 12 69985824 to 69985839 15 + TSS region transcription start site region 113671
Cpgi4705 12 69986177 to 69987517 1340 CpG island CpG island 4705
Tssr113672 12 69986412 to 69986429 17 + TSS region transcription start site region 113672
Tssr113673 12 69986439 to 69986462 23 + TSS region transcription start site region 113673
Tssr113674 12 69986827 to 69986836 9 + TSS region transcription start site region 113674
Tssr116544 12 69986958 to 69986967 9 - TSS region transcription start site region 116544
Tssr116545 12 69987039 to 69987100 61 - TSS region transcription start site region 116545
Tssr116546 12 69987101 to 69987112 11 - TSS region transcription start site region 116546
Tssr113675 12 69987190 to 69987199 9 + TSS region transcription start site region 113675
Tssr113676 12 69987201 to 69987212 11 + TSS region transcription start site region 113676
Gm23579 12 69994790 to 69994892 102 - snRNA gene predicted gene, 23579
Nin 12 70011435 to 70113717 102282 - protein coding gene ninein
Tssr116547 12 70044412 to 70044420 8 - TSS region transcription start site region 116547
Tssr116548 12 70073793 to 70073798 5 - TSS region transcription start site region 116548
Tssr116549 12 70084158 to 70084162 4 - TSS region transcription start site region 116549
D12Mit114 12 70085228 to 70085371 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 114
Vtbt13 12 70085228 to 70085371 143 QTL vertebral trabecular bone trait 13
D12Dcr5 12 70085232 to 70085335 103 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 5
Cpgi4706 12 70110779 to 70112592 1813 CpG island CpG island 4706
Tssr116550 12 70111258 to 70111274 16 - TSS region transcription start site region 116550
Tssr116551 12 70111290 to 70111301 11 - TSS region transcription start site region 116551
Tssr116552 12 70111574 to 70111588 14 - TSS region transcription start site region 116552
Tssr116553 12 70111948 to 70111959 11 - TSS region transcription start site region 116553
Tssr116554 12 70111965 to 70112039 74 - TSS region transcription start site region 116554
Gm48695 12 70113574 to 70115954 2380 + bidirectional promoter lncRNA gene predicted gene, 48695
Tssr116555 12 70113732 to 70113768 36 - TSS region transcription start site region 116555
Cpgi4707 12 70134688 to 70134869 181 CpG island CpG island 4707
Tssr116556 12 70136261 to 70136276 15 - TSS region transcription start site region 116556
Tssr113677 12 70154124 to 70154157 33 + TSS region transcription start site region 113677
Abhd12b 12 70154171 to 70183206 29035 + protein coding gene abhydrolase domain containing 12B
Pygl 12 70190815 to 70227683 36868 - protein coding gene liver glycogen phosphorylase