Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:69523221-70263276

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr116510 12 69537841 to 69537851 10 - TSS region transcription start site region 116510
Tssr113649 12 69538188 to 69538193 5 + TSS region transcription start site region 113649
Tssr113650 12 69538286 to 69538299 13 + TSS region transcription start site region 113650
Tssr116511 12 69541736 to 69541745 9 - TSS region transcription start site region 116511
Gm46353 12 69551118 to 69554519 3401 + protein coding gene predicted gene, 46353
Gm23018 12 69561229 to 69561337 108 - miRNA gene predicted gene, 23018
Vcpkmt 12 69577628 to 69583028 5400 - protein coding gene valosin containing protein lysine (K) methyltransferase
Cpgi4698 12 69582242 to 69583400 1158 CpG island CpG island 4698
Tssr116512 12 69582985 to 69583050 65 - TSS region transcription start site region 116512
Sos2 12 69583762 to 69681852 98090 - protein coding gene SOS Ras/Rho guanine nucleotide exchange factor 2
Tssr116513 12 69584546 to 69584580 34 - TSS region transcription start site region 116513
Gm24449 12 69586153 to 69586258 105 - snRNA gene predicted gene, 24449
Tssr116514 12 69596819 to 69596822 3 - TSS region transcription start site region 116514
Tssr113651 12 69597760 to 69597767 7 + TSS region transcription start site region 113651
Tssr116515 12 69607307 to 69607316 9 - TSS region transcription start site region 116515
Gm31679 12 69622309 to 69625603 3294 - protein coding gene predicted gene, 31679
Gm31598 12 69674506 to 69676969 2463 - pseudogene predicted gene, 31598
Tssr113652 12 69680866 to 69680877 11 + TSS region transcription start site region 113652
Cpgi4699 12 69681027 to 69682608 1581 CpG island CpG island 4699
Tssr116516 12 69681795 to 69681869 74 - TSS region transcription start site region 116516
Tssr116517 12 69682138 to 69682182 44 - TSS region transcription start site region 116517
Tssr116518 12 69682183 to 69682226 43 - TSS region transcription start site region 116518
Tssr116519 12 69682243 to 69682258 15 - TSS region transcription start site region 116519
Tssr116520 12 69683698 to 69683711 13 - TSS region transcription start site region 116520
L2hgdh 12 69690436 to 69724874 34438 - protein coding gene L-2-hydroxyglutarate dehydrogenase
Gm46354 12 69693313 to 69694040 727 - pseudogene predicted gene, 46354
Cpgi4700 12 69724421 to 69725376 955 CpG island CpG island 4700
Tssr116521 12 69724830 to 69724885 55 - TSS region transcription start site region 116521
Tssr113653 12 69724939 to 69724986 47 + TSS region transcription start site region 113653
Dmac2l 12 69724950 to 69744660 19710 + protein coding gene distal membrane arm assembly complex 2 like
Tssr113654 12 69724987 to 69725004 17 + TSS region transcription start site region 113654
Tssr116522 12 69746335 to 69746345 10 - TSS region transcription start site region 116522
Cdkl1 12 69746848 to 69791267 44419 - protein coding gene cyclin-dependent kinase-like 1 (CDC2-related kinase)
Cpgi4701 12 69757818 to 69758162 344 CpG island CpG island 4701
Tssr116523 12 69758647 to 69758673 26 - TSS region transcription start site region 116523
Mir681 12 69763835 to 69763944 109 - miRNA gene microRNA 681
Tssr116524 12 69767287 to 69767292 5 - TSS region transcription start site region 116524
Tssr116525 12 69769303 to 69769307 4 - TSS region transcription start site region 116525
Tssr116526 12 69769733 to 69769742 9 - TSS region transcription start site region 116526
Tssr116527 12 69790255 to 69790273 18 - TSS region transcription start site region 116527
Tssr116528 12 69790274 to 69790276 2 - TSS region transcription start site region 116528
Tssr116529 12 69790281 to 69790298 17 - TSS region transcription start site region 116529
4930512B01Rik 12 69790288 to 69840479 50191 + lncRNA gene RIKEN cDNA 4930512B01 gene
Cpgi4702 12 69790472 to 69791400 928 CpG island CpG island 4702
Tssr116530 12 69790605 to 69790631 26 - TSS region transcription start site region 116530
Tssr116531 12 69790660 to 69790735 75 - TSS region transcription start site region 116531
Tssr116532 12 69791229 to 69791293 64 - TSS region transcription start site region 116532
Tssr116533 12 69791294 to 69791295 1 - TSS region transcription start site region 116533
Tssr116534 12 69791311 to 69791323 12 - TSS region transcription start site region 116534
Tssr116535 12 69791325 to 69791338 13 - TSS region transcription start site region 116535
Tssr116536 12 69791353 to 69791364 11 - TSS region transcription start site region 116536
Lnopy2 12 69799852 to 69800022 170 QTL lens opacity 2
D12Mit34 12 69799852 to 69800022 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 34
Map4k5 12 69803757 to 69893170 89413 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 5
Gm18030 12 69819647 to 69820377 730 + pseudogene predicted gene, 18030
Tssr113655 12 69843669 to 69843695 26 + TSS region transcription start site region 113655
4931403G20Rik 12 69847635 to 69853671 6036 + lincRNA gene RIKEN cDNA 4931403G20 gene
Cpgi4703 12 69892325 to 69893543 1218 CpG island CpG island 4703
Tssr116537 12 69892779 to 69892792 13 - TSS region transcription start site region 116537
Tssr116538 12 69892989 to 69893082 93 - TSS region transcription start site region 116538
Atl1 12 69893105 to 69964085 70980 + protein coding gene atlastin GTPase 1
Tssr116539 12 69893134 to 69893151 17 - TSS region transcription start site region 116539
Tssr116540 12 69893162 to 69893176 14 - TSS region transcription start site region 116540
Tssr113656 12 69893221 to 69893276 55 + TSS region transcription start site region 113656
Tssr113657 12 69907734 to 69907745 11 + TSS region transcription start site region 113657
Tssr113658 12 69907747 to 69907754 7 + TSS region transcription start site region 113658
Tssr113659 12 69907793 to 69907808 15 + TSS region transcription start site region 113659
Tssr113660 12 69907817 to 69907826 9 + TSS region transcription start site region 113660
Tssr113661 12 69907828 to 69907843 15 + TSS region transcription start site region 113661
Cpgi4704 12 69907848 to 69908862 1014 CpG island CpG island 4704
Tssr113662 12 69907853 to 69907863 10 + TSS region transcription start site region 113662
Tssr113663 12 69907882 to 69907889 7 + TSS region transcription start site region 113663
Tssr113664 12 69907900 to 69907910 10 + TSS region transcription start site region 113664
Tssr113665 12 69907937 to 69907940 3 + TSS region transcription start site region 113665
Gm6316 12 69920472 to 69921491 1019 - pseudogene predicted pseudogene 6316
Tssr113666 12 69930903 to 69930906 3 + TSS region transcription start site region 113666
Gm22058 12 69930904 to 69931213 309 + unclassified non-coding RNA gene predicted gene, 22058
Tssr113667 12 69946142 to 69946159 17 + TSS region transcription start site region 113667
Tssr113668 12 69946169 to 69946193 24 + TSS region transcription start site region 113668
Gm3086 12 69963409 to 69969736 6327 + pseudogene predicted gene 3086
Tssr113669 12 69963412 to 69963440 28 + TSS region transcription start site region 113669
Tssr113670 12 69963452 to 69963474 22 + TSS region transcription start site region 113670
Sav1 12 69965012 to 69987002 21990 - protein coding gene salvador family WW domain containing 1
Gm19144 12 69970894 to 69972541 1647 + pseudogene predicted gene, 19144
Tssr116541 12 69976126 to 69976139 13 - TSS region transcription start site region 116541
Tssr116542 12 69979060 to 69979082 22 - TSS region transcription start site region 116542
Gm19221 12 69980886 to 69982468 1582 + pseudogene predicted gene, 19221
Tssr116543 12 69982741 to 69982744 3 - TSS region transcription start site region 116543
Tssr113671 12 69985824 to 69985839 15 + TSS region transcription start site region 113671
Cpgi4705 12 69986177 to 69987517 1340 CpG island CpG island 4705
Tssr113672 12 69986412 to 69986429 17 + TSS region transcription start site region 113672
Tssr113673 12 69986439 to 69986462 23 + TSS region transcription start site region 113673
Tssr113674 12 69986827 to 69986836 9 + TSS region transcription start site region 113674
Tssr116544 12 69986958 to 69986967 9 - TSS region transcription start site region 116544
Tssr116545 12 69987039 to 69987100 61 - TSS region transcription start site region 116545
Tssr116546 12 69987101 to 69987112 11 - TSS region transcription start site region 116546
Tssr113675 12 69987190 to 69987199 9 + TSS region transcription start site region 113675
Tssr113676 12 69987201 to 69987212 11 + TSS region transcription start site region 113676
Gm23579 12 69994790 to 69994892 102 - snRNA gene predicted gene, 23579
Nin 12 70011435 to 70113717 102282 - protein coding gene ninein
Tssr116547 12 70044412 to 70044420 8 - TSS region transcription start site region 116547
Tssr116548 12 70073793 to 70073798 5 - TSS region transcription start site region 116548
Tssr116549 12 70084158 to 70084162 4 - TSS region transcription start site region 116549
Vtbt13 12 70085228 to 70085371 143 QTL vertebral trabecular bone trait 13
D12Mit114 12 70085228 to 70085371 143 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 114
D12Dcr5 12 70085232 to 70085335 103 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 5
Cpgi4706 12 70110779 to 70112592 1813 CpG island CpG island 4706
Tssr116550 12 70111258 to 70111274 16 - TSS region transcription start site region 116550
Tssr116551 12 70111290 to 70111301 11 - TSS region transcription start site region 116551
Tssr116552 12 70111574 to 70111588 14 - TSS region transcription start site region 116552
Tssr116553 12 70111948 to 70111959 11 - TSS region transcription start site region 116553
Tssr116554 12 70111965 to 70112039 74 - TSS region transcription start site region 116554
Gm48695 12 70113574 to 70115954 2380 + bidirectional promoter lncRNA gene predicted gene, 48695
Tssr116555 12 70113732 to 70113768 36 - TSS region transcription start site region 116555
Cpgi4707 12 70134688 to 70134869 181 CpG island CpG island 4707
Tssr116556 12 70136261 to 70136276 15 - TSS region transcription start site region 116556
Tssr113677 12 70154124 to 70154157 33 + TSS region transcription start site region 113677
Abhd12b 12 70154171 to 70183206 29035 + protein coding gene abhydrolase domain containing 12B
Pygl 12 70190815 to 70227683 36868 - protein coding gene liver glycogen phosphorylase
Tssr3855 12 70219437 to 70219452 15 + TSS region transcription start site region 3855
Cpgi4708 12 70227146 to 70227941 795 CpG island CpG island 4708
Tssr116557 12 70227430 to 70227454 24 - TSS region transcription start site region 116557
Tssr116558 12 70227622 to 70227639 17 - TSS region transcription start site region 116558
Tssr116559 12 70227658 to 70227669 11 - TSS region transcription start site region 116559
F730035M05Rik 12 70227841 to 70234165 6324 + lincRNA gene RIKEN cDNA F730035M05 gene
Gm38467 12 70229349 to 70233132 3783 - lncRNA gene predicted gene, 38467
Tssr116560 12 70231414 to 70231457 43 - TSS region transcription start site region 116560
Tssr116561 12 70232343 to 70232348 5 - TSS region transcription start site region 116561
Tssr113678 12 70233864 to 70233898 34 + TSS region transcription start site region 113678
Trim9 12 70244533 to 70347614 103081 - protein coding gene tripartite motif-containing 9
Cpgi4709 12 70246163 to 70246484 321 CpG island CpG island 4709
Gm48747 12 70251165 to 70275597 24432 + antisense lncRNA gene predicted gene, 48747