Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:69056959-69427004

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4685 12 69087600 to 69087969 369 CpG island CpG island 4685
Gm47518 12 69115014 to 69120347 5333 - lincRNA gene predicted gene, 47518
Tssr113616 12 69122974 to 69122986 12 + TSS region transcription start site region 113616
Gm7868 12 69123101 to 69123777 676 + pseudogene predicted gene 7868
Tssr113617 12 69129829 to 69129860 31 + TSS region transcription start site region 113617
Gm31447 12 69129836 to 69145076 15240 + lincRNA gene predicted gene, 31447
Gm15571 12 69141430 to 69142066 636 - pseudogene predicted gene 15571
Gm24499 12 69152274 to 69152377 103 - snRNA gene predicted gene, 24499
Rps29 12 69157722 to 69159186 1464 - protein coding gene ribosomal protein S29
Cpgi4686 12 69158517 to 69159322 805 CpG island CpG island 4686
Tssr116482 12 69159109 to 69159133 24 - TSS region transcription start site region 116482
Tssr113618 12 69159281 to 69159296 15 + TSS region transcription start site region 113618
Rn7s1 12 69159295 to 69159593 298 + SRP RNA gene 7S RNA 1
Gm47287 12 69159437 to 69159506 69 + miRNA gene predicted gene, 47287
Gm47295 12 69159518 to 69159596 78 + miRNA gene predicted gene, 47295
Cpgi4687 12 69168485 to 69169246 761 CpG island CpG island 4687
Tssr113619 12 69168808 to 69168839 31 + TSS region transcription start site region 113619
Lrr1 12 69168814 to 69179009 10195 + protein coding gene leucine rich repeat protein 1
Tssr113620 12 69168841 to 69168854 13 + TSS region transcription start site region 113620
Rpl36al 12 69182734 to 69184067 1333 - protein coding gene ribosomal protein L36A-like
Gm49383 12 69182834 to 69197104 14270 - protein coding gene predicted gene, 49383
Cpgi4688 12 69183499 to 69185313 1814 CpG island CpG island 4688
Tssr116483 12 69184025 to 69184051 26 - TSS region transcription start site region 116483
Tssr116484 12 69184056 to 69184065 9 - TSS region transcription start site region 116484
Mgat2 12 69184157 to 69186770 2613 + protein coding gene mannoside acetylglucosaminyltransferase 2
Tssr113621 12 69184159 to 69184170 11 + TSS region transcription start site region 113621
Tssr113622 12 69184177 to 69184218 41 + TSS region transcription start site region 113622
Tssr116485 12 69184420 to 69184438 18 - TSS region transcription start site region 116485
Tssr116486 12 69184439 to 69184460 21 - TSS region transcription start site region 116486
Dnaaf2 12 69189087 to 69198429 9342 - protein coding gene dynein, axonemal assembly factor 2
Gm49384 12 69189839 to 69204267 14428 - protein coding gene predicted gene, 49384
D12Mit70 12 69190446 to 69190616 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 70
Cpgi4689 12 69196651 to 69198470 1819 CpG island CpG island 4689
Tssr116487 12 69197054 to 69197070 16 - TSS region transcription start site region 116487
Tssr116488 12 69197098 to 69197117 19 - TSS region transcription start site region 116488
Tssr116489 12 69197127 to 69197157 30 - TSS region transcription start site region 116489
Tssr3854 12 69197164 to 69197197 33 + TSS region transcription start site region 3854
Tssr113623 12 69197200 to 69197253 53 + TSS region transcription start site region 113623
9330151L19Rik 12 69197211 to 69199867 2656 + bidirectional promoter lncRNA gene RIKEN cDNA 9330151L19 gene
Tssr116490 12 69197607 to 69197615 8 - TSS region transcription start site region 116490
Tssr116491 12 69198371 to 69198385 14 - TSS region transcription start site region 116491
Tssr116492 12 69198401 to 69198416 15 - TSS region transcription start site region 116492
Tssr116493 12 69198419 to 69198420 1 - TSS region transcription start site region 116493
Pole2 12 69201773 to 69228195 26422 - protein coding gene polymerase (DNA directed), epsilon 2 (p59 subunit)
Cpgi4690 12 69227775 to 69228286 511 CpG island CpG island 4690
Gm47545 12 69227926 to 69238284 10358 + antisense lncRNA gene predicted gene, 47545
Tssr116494 12 69228167 to 69228184 17 - TSS region transcription start site region 116494
Tssr113624 12 69228632 to 69228641 9 + TSS region transcription start site region 113624
Klhdc1 12 69241176 to 69284632 43456 + protein coding gene kelch domain containing 1
Cpgi4691 12 69241551 to 69242402 851 CpG island CpG island 4691
Tssr113625 12 69241841 to 69241901 60 + TSS region transcription start site region 113625
Tssr116495 12 69241959 to 69242004 45 - TSS region transcription start site region 116495
Tssr113626 12 69258159 to 69258168 9 + TSS region transcription start site region 113626
Tssr113627 12 69258171 to 69258182 11 + TSS region transcription start site region 113627
Tssr113628 12 69258187 to 69258194 7 + TSS region transcription start site region 113628
Gm15561 12 69267771 to 69273432 5661 - antisense lncRNA gene predicted gene 15561
Tssr113629 12 69295982 to 69295992 10 + TSS region transcription start site region 113629
Cpgi4692 12 69296418 to 69297539 1121 CpG island CpG island 4692
Tssr113630 12 69296676 to 69296798 122 + TSS region transcription start site region 113630
Klhdc2 12 69296681 to 69310687 14006 + protein coding gene kelch domain containing 2
Tssr113631 12 69296831 to 69296904 73 + TSS region transcription start site region 113631
Tssr113632 12 69296928 to 69296933 5 + TSS region transcription start site region 113632
Tssr113633 12 69296938 to 69296943 5 + TSS region transcription start site region 113633
Tssr113634 12 69296964 to 69296971 7 + TSS region transcription start site region 113634
Tssr113635 12 69296972 to 69296990 18 + TSS region transcription start site region 113635
Tssr116496 12 69297234 to 69297245 11 - TSS region transcription start site region 116496
Tssr113636 12 69297399 to 69297446 47 + TSS region transcription start site region 113636
Tssr113637 12 69302342 to 69302361 19 + TSS region transcription start site region 113637
Tssr113638 12 69310521 to 69310526 5 + TSS region transcription start site region 113638
Nemf 12 69311543 to 69357176 45633 - protein coding gene nuclear export mediator factor
Tssr116497 12 69318135 to 69318148 13 - TSS region transcription start site region 116497
Tssr116498 12 69318570 to 69318581 11 - TSS region transcription start site region 116498
Tssr116499 12 69320399 to 69320402 3 - TSS region transcription start site region 116499
Tssr116500 12 69322256 to 69322268 12 - TSS region transcription start site region 116500
Tssr116501 12 69322288 to 69322303 15 - TSS region transcription start site region 116501
Tssr116502 12 69344154 to 69344190 36 - TSS region transcription start site region 116502
Cpgi4693 12 69356593 to 69357284 691 CpG island CpG island 4693
Tssr116503 12 69357109 to 69357116 7 - TSS region transcription start site region 116503
Tssr116504 12 69357120 to 69357181 61 - TSS region transcription start site region 116504
Gm47299 12 69361179 to 69361258 79 - miRNA gene predicted gene, 47299
Rn7s2 12 69361183 to 69361481 298 - SRP RNA gene 7S RNA 2
Gm47305 12 69361270 to 69361339 69 - miRNA gene predicted gene, 47305
Cpgi4694 12 69361462 to 69361808 346 CpG island CpG island 4694
Cpgi4695 12 69364104 to 69364457 353 CpG island CpG island 4695
Tssr113639 12 69364338 to 69364360 22 + TSS region transcription start site region 113639
Gm18113 12 69369514 to 69370023 509 - pseudogene predicted gene, 18113
Cpgi4696 12 69371514 to 69373313 1799 CpG island CpG island 4696
Gm9887 12 69371835 to 69372458 623 - protein coding gene predicted gene 9887
Tssr116505 12 69371942 to 69372007 65 - TSS region transcription start site region 116505
Tssr113640 12 69372051 to 69372062 11 + TSS region transcription start site region 113640
Tssr113641 12 69372112 to 69372172 60 + TSS region transcription start site region 113641
Arf6 12 69372150 to 69373783 1633 + protein coding gene ADP-ribosylation factor 6
Tssr116506 12 69372443 to 69372540 97 - TSS region transcription start site region 116506
Tssr113642 12 69372545 to 69372645 100 + TSS region transcription start site region 113642
Tssr113643 12 69373493 to 69373507 14 + TSS region transcription start site region 113643
Tssr113644 12 69374597 to 69374621 24 + TSS region transcription start site region 113644
Tssr113645 12 69374899 to 69374910 11 + TSS region transcription start site region 113645
Tssr113646 12 69375573 to 69375577 4 + TSS region transcription start site region 113646
Tssr116507 12 69402842 to 69402847 5 - TSS region transcription start site region 116507