Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:69042067-69961741

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186 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4685 12 69087600 to 69087969 369 CpG island CpG island 4685
Gm47518 12 69115014 to 69120347 5333 - lincRNA gene predicted gene, 47518
Tssr113616 12 69122974 to 69122986 12 + TSS region transcription start site region 113616
Gm7868 12 69123101 to 69123777 676 + pseudogene predicted gene 7868
Tssr113617 12 69129829 to 69129860 31 + TSS region transcription start site region 113617
Gm31447 12 69129836 to 69145076 15240 + lincRNA gene predicted gene, 31447
Gm15571 12 69141430 to 69142066 636 - pseudogene predicted gene 15571
Gm24499 12 69152274 to 69152377 103 - snRNA gene predicted gene, 24499
Rps29 12 69157722 to 69159186 1464 - protein coding gene ribosomal protein S29
Cpgi4686 12 69158517 to 69159322 805 CpG island CpG island 4686
Tssr116482 12 69159109 to 69159133 24 - TSS region transcription start site region 116482
Tssr113618 12 69159281 to 69159296 15 + TSS region transcription start site region 113618
Rn7s1 12 69159295 to 69159593 298 + SRP RNA gene 7S RNA 1
Gm47287 12 69159437 to 69159506 69 + miRNA gene predicted gene, 47287
Gm47295 12 69159518 to 69159596 78 + miRNA gene predicted gene, 47295
Cpgi4687 12 69168485 to 69169246 761 CpG island CpG island 4687
Tssr113619 12 69168808 to 69168839 31 + TSS region transcription start site region 113619
Lrr1 12 69168814 to 69179009 10195 + protein coding gene leucine rich repeat protein 1
Tssr113620 12 69168841 to 69168854 13 + TSS region transcription start site region 113620
Rpl36al 12 69182734 to 69184067 1333 - protein coding gene ribosomal protein L36A-like
Gm49383 12 69182834 to 69197104 14270 - protein coding gene predicted gene, 49383
Cpgi4688 12 69183499 to 69185313 1814 CpG island CpG island 4688
Tssr116483 12 69184025 to 69184051 26 - TSS region transcription start site region 116483
Tssr116484 12 69184056 to 69184065 9 - TSS region transcription start site region 116484
Mgat2 12 69184157 to 69186770 2613 + protein coding gene mannoside acetylglucosaminyltransferase 2
Tssr113621 12 69184159 to 69184170 11 + TSS region transcription start site region 113621
Tssr113622 12 69184177 to 69184218 41 + TSS region transcription start site region 113622
Tssr116485 12 69184420 to 69184438 18 - TSS region transcription start site region 116485
Tssr116486 12 69184439 to 69184460 21 - TSS region transcription start site region 116486
Dnaaf2 12 69189087 to 69198429 9342 - protein coding gene dynein, axonemal assembly factor 2
Gm49384 12 69189839 to 69204267 14428 - protein coding gene predicted gene, 49384
D12Mit70 12 69190446 to 69190616 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 70
Cpgi4689 12 69196651 to 69198470 1819 CpG island CpG island 4689
Tssr116487 12 69197054 to 69197070 16 - TSS region transcription start site region 116487
Tssr116488 12 69197098 to 69197117 19 - TSS region transcription start site region 116488
Tssr116489 12 69197127 to 69197157 30 - TSS region transcription start site region 116489
Tssr3854 12 69197164 to 69197197 33 + TSS region transcription start site region 3854
Tssr113623 12 69197200 to 69197253 53 + TSS region transcription start site region 113623
9330151L19Rik 12 69197211 to 69199867 2656 + bidirectional promoter lncRNA gene RIKEN cDNA 9330151L19 gene
Tssr116490 12 69197607 to 69197615 8 - TSS region transcription start site region 116490
Tssr116491 12 69198371 to 69198385 14 - TSS region transcription start site region 116491
Tssr116492 12 69198401 to 69198416 15 - TSS region transcription start site region 116492
Tssr116493 12 69198419 to 69198420 1 - TSS region transcription start site region 116493
Pole2 12 69201773 to 69228195 26422 - protein coding gene polymerase (DNA directed), epsilon 2 (p59 subunit)
Cpgi4690 12 69227775 to 69228286 511 CpG island CpG island 4690
Gm47545 12 69227926 to 69238284 10358 + antisense lncRNA gene predicted gene, 47545
Tssr116494 12 69228167 to 69228184 17 - TSS region transcription start site region 116494
Tssr113624 12 69228632 to 69228641 9 + TSS region transcription start site region 113624
Klhdc1 12 69241176 to 69284632 43456 + protein coding gene kelch domain containing 1
Cpgi4691 12 69241551 to 69242402 851 CpG island CpG island 4691
Tssr113625 12 69241841 to 69241901 60 + TSS region transcription start site region 113625
Tssr116495 12 69241959 to 69242004 45 - TSS region transcription start site region 116495
Tssr113626 12 69258159 to 69258168 9 + TSS region transcription start site region 113626
Tssr113627 12 69258171 to 69258182 11 + TSS region transcription start site region 113627
Tssr113628 12 69258187 to 69258194 7 + TSS region transcription start site region 113628
Gm15561 12 69267771 to 69273432 5661 - antisense lncRNA gene predicted gene 15561
Tssr113629 12 69295982 to 69295992 10 + TSS region transcription start site region 113629
Cpgi4692 12 69296418 to 69297539 1121 CpG island CpG island 4692
Tssr113630 12 69296676 to 69296798 122 + TSS region transcription start site region 113630
Klhdc2 12 69296681 to 69310687 14006 + protein coding gene kelch domain containing 2
Tssr113631 12 69296831 to 69296904 73 + TSS region transcription start site region 113631
Tssr113632 12 69296928 to 69296933 5 + TSS region transcription start site region 113632
Tssr113633 12 69296938 to 69296943 5 + TSS region transcription start site region 113633
Tssr113634 12 69296964 to 69296971 7 + TSS region transcription start site region 113634
Tssr113635 12 69296972 to 69296990 18 + TSS region transcription start site region 113635
Tssr116496 12 69297234 to 69297245 11 - TSS region transcription start site region 116496
Tssr113636 12 69297399 to 69297446 47 + TSS region transcription start site region 113636
Tssr113637 12 69302342 to 69302361 19 + TSS region transcription start site region 113637
Tssr113638 12 69310521 to 69310526 5 + TSS region transcription start site region 113638
Nemf 12 69311543 to 69357176 45633 - protein coding gene nuclear export mediator factor
Tssr116497 12 69318135 to 69318148 13 - TSS region transcription start site region 116497
Tssr116498 12 69318570 to 69318581 11 - TSS region transcription start site region 116498
Tssr116499 12 69320399 to 69320402 3 - TSS region transcription start site region 116499
Tssr116500 12 69322256 to 69322268 12 - TSS region transcription start site region 116500
Tssr116501 12 69322288 to 69322303 15 - TSS region transcription start site region 116501
Tssr116502 12 69344154 to 69344190 36 - TSS region transcription start site region 116502
Cpgi4693 12 69356593 to 69357284 691 CpG island CpG island 4693
Tssr116503 12 69357109 to 69357116 7 - TSS region transcription start site region 116503
Tssr116504 12 69357120 to 69357181 61 - TSS region transcription start site region 116504
Gm47299 12 69361179 to 69361258 79 - miRNA gene predicted gene, 47299
Rn7s2 12 69361183 to 69361481 298 - SRP RNA gene 7S RNA 2
Gm47305 12 69361270 to 69361339 69 - miRNA gene predicted gene, 47305
Cpgi4694 12 69361462 to 69361808 346 CpG island CpG island 4694
Cpgi4695 12 69364104 to 69364457 353 CpG island CpG island 4695
Tssr113639 12 69364338 to 69364360 22 + TSS region transcription start site region 113639
Gm18113 12 69369514 to 69370023 509 - pseudogene predicted gene, 18113
Cpgi4696 12 69371514 to 69373313 1799 CpG island CpG island 4696
Gm9887 12 69371835 to 69372458 623 - protein coding gene predicted gene 9887
Tssr116505 12 69371942 to 69372007 65 - TSS region transcription start site region 116505
Tssr113640 12 69372051 to 69372062 11 + TSS region transcription start site region 113640
Tssr113641 12 69372112 to 69372172 60 + TSS region transcription start site region 113641
Arf6 12 69372150 to 69373783 1633 + protein coding gene ADP-ribosylation factor 6
Tssr116506 12 69372443 to 69372540 97 - TSS region transcription start site region 116506
Tssr113642 12 69372545 to 69372645 100 + TSS region transcription start site region 113642
Tssr113643 12 69373493 to 69373507 14 + TSS region transcription start site region 113643
Tssr113644 12 69374597 to 69374621 24 + TSS region transcription start site region 113644
Tssr113645 12 69374899 to 69374910 11 + TSS region transcription start site region 113645
Tssr113646 12 69375573 to 69375577 4 + TSS region transcription start site region 113646
Tssr116507 12 69402842 to 69402847 5 - TSS region transcription start site region 116507
Tssr113647 12 69447708 to 69447712 4 + TSS region transcription start site region 113647
Gm40434 12 69461787 to 69462846 1059 + lncRNA gene predicted gene, 40434
5830428M24Rik 12 69464787 to 69475550 10763 - lncRNA gene RIKEN cDNA 5830428M24 gene
Tssr116508 12 69475510 to 69475555 45 - TSS region transcription start site region 116508
Tssr116509 12 69475567 to 69475588 21 - TSS region transcription start site region 116509
Cpgi4697 12 69476860 to 69477066 206 CpG island CpG island 4697
Gm31512 12 69497067 to 69506741 9674 + lncRNA gene predicted gene, 31512
Tssr113648 12 69502537 to 69502588 51 + TSS region transcription start site region 113648
Tssr116510 12 69537841 to 69537851 10 - TSS region transcription start site region 116510
Tssr113649 12 69538188 to 69538193 5 + TSS region transcription start site region 113649
Tssr113650 12 69538286 to 69538299 13 + TSS region transcription start site region 113650
Tssr116511 12 69541736 to 69541745 9 - TSS region transcription start site region 116511
Gm46353 12 69551118 to 69554519 3401 + protein coding gene predicted gene, 46353
Gm23018 12 69561229 to 69561337 108 - miRNA gene predicted gene, 23018
Vcpkmt 12 69577628 to 69583028 5400 - protein coding gene valosin containing protein lysine (K) methyltransferase
Cpgi4698 12 69582242 to 69583400 1158 CpG island CpG island 4698
Tssr116512 12 69582985 to 69583050 65 - TSS region transcription start site region 116512
Sos2 12 69583762 to 69681852 98090 - protein coding gene SOS Ras/Rho guanine nucleotide exchange factor 2
Tssr116513 12 69584546 to 69584580 34 - TSS region transcription start site region 116513
Gm24449 12 69586153 to 69586258 105 - snRNA gene predicted gene, 24449
Tssr116514 12 69596819 to 69596822 3 - TSS region transcription start site region 116514
Tssr113651 12 69597760 to 69597767 7 + TSS region transcription start site region 113651
Tssr116515 12 69607307 to 69607316 9 - TSS region transcription start site region 116515
Gm31679 12 69622309 to 69625603 3294 - protein coding gene predicted gene, 31679
Gm31598 12 69674506 to 69676969 2463 - pseudogene predicted gene, 31598
Tssr113652 12 69680866 to 69680877 11 + TSS region transcription start site region 113652
Cpgi4699 12 69681027 to 69682608 1581 CpG island CpG island 4699
Tssr116516 12 69681795 to 69681869 74 - TSS region transcription start site region 116516
Tssr116517 12 69682138 to 69682182 44 - TSS region transcription start site region 116517
Tssr116518 12 69682183 to 69682226 43 - TSS region transcription start site region 116518
Tssr116519 12 69682243 to 69682258 15 - TSS region transcription start site region 116519
Tssr116520 12 69683698 to 69683711 13 - TSS region transcription start site region 116520
L2hgdh 12 69690436 to 69724874 34438 - protein coding gene L-2-hydroxyglutarate dehydrogenase
Gm46354 12 69693313 to 69694040 727 - pseudogene predicted gene, 46354
Cpgi4700 12 69724421 to 69725376 955 CpG island CpG island 4700
Tssr116521 12 69724830 to 69724885 55 - TSS region transcription start site region 116521
Tssr113653 12 69724939 to 69724986 47 + TSS region transcription start site region 113653
Dmac2l 12 69724950 to 69744660 19710 + protein coding gene distal membrane arm assembly complex 2 like
Tssr113654 12 69724987 to 69725004 17 + TSS region transcription start site region 113654
Tssr116522 12 69746335 to 69746345 10 - TSS region transcription start site region 116522
Cdkl1 12 69746848 to 69791267 44419 - protein coding gene cyclin-dependent kinase-like 1 (CDC2-related kinase)
Cpgi4701 12 69757818 to 69758162 344 CpG island CpG island 4701
Tssr116523 12 69758647 to 69758673 26 - TSS region transcription start site region 116523
Mir681 12 69763835 to 69763944 109 - miRNA gene microRNA 681
Tssr116524 12 69767287 to 69767292 5 - TSS region transcription start site region 116524
Tssr116525 12 69769303 to 69769307 4 - TSS region transcription start site region 116525
Tssr116526 12 69769733 to 69769742 9 - TSS region transcription start site region 116526
Tssr116527 12 69790255 to 69790273 18 - TSS region transcription start site region 116527
Tssr116528 12 69790274 to 69790276 2 - TSS region transcription start site region 116528
Tssr116529 12 69790281 to 69790298 17 - TSS region transcription start site region 116529
4930512B01Rik 12 69790288 to 69840479 50191 + lncRNA gene RIKEN cDNA 4930512B01 gene
Cpgi4702 12 69790472 to 69791400 928 CpG island CpG island 4702
Tssr116530 12 69790605 to 69790631 26 - TSS region transcription start site region 116530
Tssr116531 12 69790660 to 69790735 75 - TSS region transcription start site region 116531
Tssr116532 12 69791229 to 69791293 64 - TSS region transcription start site region 116532
Tssr116533 12 69791294 to 69791295 1 - TSS region transcription start site region 116533
Tssr116534 12 69791311 to 69791323 12 - TSS region transcription start site region 116534
Tssr116535 12 69791325 to 69791338 13 - TSS region transcription start site region 116535
Tssr116536 12 69791353 to 69791364 11 - TSS region transcription start site region 116536
D12Mit34 12 69799852 to 69800022 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 34
Lnopy2 12 69799852 to 69800022 170 QTL lens opacity 2
Map4k5 12 69803757 to 69893170 89413 - protein coding gene mitogen-activated protein kinase kinase kinase kinase 5
Gm18030 12 69819647 to 69820377 730 + pseudogene predicted gene, 18030
Tssr113655 12 69843669 to 69843695 26 + TSS region transcription start site region 113655
4931403G20Rik 12 69847635 to 69853671 6036 + lincRNA gene RIKEN cDNA 4931403G20 gene
Cpgi4703 12 69892325 to 69893543 1218 CpG island CpG island 4703
Tssr116537 12 69892779 to 69892792 13 - TSS region transcription start site region 116537
Tssr116538 12 69892989 to 69893082 93 - TSS region transcription start site region 116538
Atl1 12 69893105 to 69964085 70980 + protein coding gene atlastin GTPase 1
Tssr116539 12 69893134 to 69893151 17 - TSS region transcription start site region 116539
Tssr116540 12 69893162 to 69893176 14 - TSS region transcription start site region 116540
Tssr113656 12 69893221 to 69893276 55 + TSS region transcription start site region 113656
Tssr113657 12 69907734 to 69907745 11 + TSS region transcription start site region 113657
Tssr113658 12 69907747 to 69907754 7 + TSS region transcription start site region 113658
Tssr113659 12 69907793 to 69907808 15 + TSS region transcription start site region 113659
Tssr113660 12 69907817 to 69907826 9 + TSS region transcription start site region 113660
Tssr113661 12 69907828 to 69907843 15 + TSS region transcription start site region 113661
Cpgi4704 12 69907848 to 69908862 1014 CpG island CpG island 4704
Tssr113662 12 69907853 to 69907863 10 + TSS region transcription start site region 113662
Tssr113663 12 69907882 to 69907889 7 + TSS region transcription start site region 113663
Tssr113664 12 69907900 to 69907910 10 + TSS region transcription start site region 113664
Tssr113665 12 69907937 to 69907940 3 + TSS region transcription start site region 113665
Gm6316 12 69920472 to 69921491 1019 - pseudogene predicted pseudogene 6316
Tssr113666 12 69930903 to 69930906 3 + TSS region transcription start site region 113666
Gm22058 12 69930904 to 69931213 309 + unclassified non-coding RNA gene predicted gene, 22058
Tssr113667 12 69946142 to 69946159 17 + TSS region transcription start site region 113667
Tssr113668 12 69946169 to 69946193 24 + TSS region transcription start site region 113668