Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:67821647-69272329

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq16 12 67568130 to 68024081 455951 QTL liver fibrosis QTL 16
Gm47452 12 67822018 to 67822396 378 - pseudogene predicted gene, 47452
D12Mit75 12 67904059 to 67904310 251 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 75
Gm20102 12 67926041 to 67926259 218 - pseudogene predicted gene, 20102
D12Mit1005 12 67927093 to 67927233 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1005
Gm47453 12 68047704 to 68067037 19333 - lincRNA gene predicted gene, 47453
Hspe1-ps1 12 68090407 to 68091074 667 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 1
D12Mit137 12 68151283 to 68151410 127 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 137
D12Jpk2 12 68174063 to 68174194 131 DNA segment DNA segment, Chr 12, Japan, Kominami 2
D12Mit248 12 68237339 to 68237462 123 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 248
Gm47454 12 68332622 to 68333830 1208 + unclassified gene predicted gene, 47454
Gm47456 12 68340465 to 68445833 105368 - lincRNA gene predicted gene, 47456
Tssr113615 12 68424501 to 68424507 6 + TSS region transcription start site region 113615
D12Mit35.1 12 68430093 to 68430226 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 35.1
D12Mit35 12 68430220 to 68430376 156 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 35
Gm47457 12 68435808 to 68440282 4474 - unclassified gene predicted gene, 47457
Gm19176 12 68499386 to 68501210 1824 - pseudogene predicted gene, 19176
Gm47489 12 68511818 to 68532231 20413 - lincRNA gene predicted gene, 47489
Gm19047 12 68536787 to 68537821 1034 + pseudogene predicted gene, 19047
Gm47490 12 68546647 to 68547329 682 + pseudogene predicted gene, 47490
n-R5s61 12 68600970 to 68601087 117 + rRNA gene nuclear encoded rRNA 5S 61
D12Jcs18 12 68611543 to 68611847 304 DNA segment DNA segment, Chr 12, John C. Schimenti 18
D12Mit71 12 68646835 to 68646975 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 71
Gm31307 12 68650834 to 68662633 11799 + lncRNA gene predicted gene, 31307
Gm47491 12 68811184 to 68812297 1113 - pseudogene predicted gene, 47491
Gm47515 12 68896529 to 68994970 98441 - lincRNA gene predicted gene, 47515
Gm2912 12 68970570 to 68989377 18807 + lincRNA gene predicted gene 2912
Cpgi4685 12 69087600 to 69087969 369 CpG island CpG island 4685
Gm47518 12 69115014 to 69120347 5333 - lincRNA gene predicted gene, 47518
Tssr113616 12 69122974 to 69122986 12 + TSS region transcription start site region 113616
Gm7868 12 69123101 to 69123777 676 + pseudogene predicted gene 7868
Tssr113617 12 69129829 to 69129860 31 + TSS region transcription start site region 113617
Gm31447 12 69129836 to 69145076 15240 + lincRNA gene predicted gene, 31447
Gm15571 12 69141430 to 69142066 636 - pseudogene predicted gene 15571
Gm24499 12 69152274 to 69152377 103 - snRNA gene predicted gene, 24499
Rps29 12 69157722 to 69159186 1464 - protein coding gene ribosomal protein S29
Cpgi4686 12 69158517 to 69159322 805 CpG island CpG island 4686
Tssr116482 12 69159109 to 69159133 24 - TSS region transcription start site region 116482
Tssr113618 12 69159281 to 69159296 15 + TSS region transcription start site region 113618
Rn7s1 12 69159295 to 69159593 298 + SRP RNA gene 7S RNA 1
Gm47287 12 69159437 to 69159506 69 + miRNA gene predicted gene, 47287
Gm47295 12 69159518 to 69159596 78 + miRNA gene predicted gene, 47295
Cpgi4687 12 69168485 to 69169246 761 CpG island CpG island 4687
Tssr113619 12 69168808 to 69168839 31 + TSS region transcription start site region 113619
Lrr1 12 69168814 to 69179009 10195 + protein coding gene leucine rich repeat protein 1
Tssr113620 12 69168841 to 69168854 13 + TSS region transcription start site region 113620
Rpl36al 12 69182734 to 69184067 1333 - protein coding gene ribosomal protein L36A-like
Gm49383 12 69182834 to 69197104 14270 - protein coding gene predicted gene, 49383
Cpgi4688 12 69183499 to 69185313 1814 CpG island CpG island 4688
Tssr116483 12 69184025 to 69184051 26 - TSS region transcription start site region 116483
Tssr116484 12 69184056 to 69184065 9 - TSS region transcription start site region 116484
Mgat2 12 69184157 to 69186770 2613 + protein coding gene mannoside acetylglucosaminyltransferase 2
Tssr113621 12 69184159 to 69184170 11 + TSS region transcription start site region 113621
Tssr113622 12 69184177 to 69184218 41 + TSS region transcription start site region 113622
Tssr116485 12 69184420 to 69184438 18 - TSS region transcription start site region 116485
Tssr116486 12 69184439 to 69184460 21 - TSS region transcription start site region 116486
Dnaaf2 12 69189087 to 69198429 9342 - protein coding gene dynein, axonemal assembly factor 2
Gm49384 12 69189839 to 69204267 14428 - protein coding gene predicted gene, 49384
D12Mit70 12 69190446 to 69190616 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 70
Cpgi4689 12 69196651 to 69198470 1819 CpG island CpG island 4689
Tssr116487 12 69197054 to 69197070 16 - TSS region transcription start site region 116487
Tssr116488 12 69197098 to 69197117 19 - TSS region transcription start site region 116488
Tssr116489 12 69197127 to 69197157 30 - TSS region transcription start site region 116489
Tssr3854 12 69197164 to 69197197 33 + TSS region transcription start site region 3854
Tssr113623 12 69197200 to 69197253 53 + TSS region transcription start site region 113623
9330151L19Rik 12 69197211 to 69199867 2656 + bidirectional promoter lncRNA gene RIKEN cDNA 9330151L19 gene
Tssr116490 12 69197607 to 69197615 8 - TSS region transcription start site region 116490
Tssr116491 12 69198371 to 69198385 14 - TSS region transcription start site region 116491
Tssr116492 12 69198401 to 69198416 15 - TSS region transcription start site region 116492
Tssr116493 12 69198419 to 69198420 1 - TSS region transcription start site region 116493
Pole2 12 69201773 to 69228195 26422 - protein coding gene polymerase (DNA directed), epsilon 2 (p59 subunit)
Cpgi4690 12 69227775 to 69228286 511 CpG island CpG island 4690
Gm47545 12 69227926 to 69238284 10358 + antisense lncRNA gene predicted gene, 47545
Tssr116494 12 69228167 to 69228184 17 - TSS region transcription start site region 116494
Tssr113624 12 69228632 to 69228641 9 + TSS region transcription start site region 113624
Klhdc1 12 69241176 to 69284632 43456 + protein coding gene kelch domain containing 1
Cpgi4691 12 69241551 to 69242402 851 CpG island CpG island 4691
Tssr113625 12 69241841 to 69241901 60 + TSS region transcription start site region 113625
Tssr116495 12 69241959 to 69242004 45 - TSS region transcription start site region 116495
Tssr113626 12 69258159 to 69258168 9 + TSS region transcription start site region 113626
Tssr113627 12 69258171 to 69258182 11 + TSS region transcription start site region 113627
Tssr113628 12 69258187 to 69258194 7 + TSS region transcription start site region 113628
Gm15561 12 69267771 to 69273432 5661 - antisense lncRNA gene predicted gene 15561