Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:66872741-73092744

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608 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdga2 12 66466060 to 67222549 756489 - protein coding gene MAM domain containing glycosylphosphatidylinositol anchor 2
Gm47989 12 66942411 to 66942521 110 + unclassified gene predicted gene, 47989
Tssr113612 12 66952224 to 66952236 12 + TSS region transcription start site region 113612
Tssr113613 12 67059181 to 67059193 12 + TSS region transcription start site region 113613
Cpgi4683 12 67059204 to 67059588 384 CpG island CpG island 4683
Tssr3853 12 67059250 to 67059297 47 + TSS region transcription start site region 3853
Tssr116473 12 67059401 to 67059451 50 - TSS region transcription start site region 116473
Tssr116474 12 67059897 to 67059923 26 - TSS region transcription start site region 116474
Tssr116475 12 67082116 to 67082123 7 - TSS region transcription start site region 116475
Tssr116476 12 67110586 to 67110589 3 - TSS region transcription start site region 116476
Gm47987 12 67120126 to 67122920 2794 - unclassified gene predicted gene, 47987
Tssr116477 12 67122899 to 67122902 3 - TSS region transcription start site region 116477
Tssr116478 12 67193940 to 67193983 43 - TSS region transcription start site region 116478
Tssr116479 12 67209520 to 67209524 4 - TSS region transcription start site region 116479
Cpgi4684 12 67220670 to 67223016 2346 CpG island CpG island 4684
Tssr116480 12 67222550 to 67222578 28 - TSS region transcription start site region 116480
Tssr116481 12 67222589 to 67222600 11 - TSS region transcription start site region 116481
Gm48059 12 67345588 to 67345750 162 - pseudogene predicted gene, 48059
Gm48060 12 67427947 to 67428244 297 - pseudogene predicted gene, 48060
n-R5s60 12 67489113 to 67489231 118 - rRNA gene nuclear encoded rRNA 5S 60
Rpl17-ps3 12 67510756 to 67511311 555 + pseudogene ribosomal protein L17, pseudogene 3
Lfibq16 12 67568130 to 68024081 455951 QTL liver fibrosis QTL 16
Gm26256 12 67612296 to 67612481 185 + snRNA gene predicted gene, 26256
Tssr113614 12 67651373 to 67651376 3 + TSS region transcription start site region 113614
Gm47432 12 67651385 to 67658263 6878 + lincRNA gene predicted gene, 47432
Gm17821 12 67658527 to 67669276 10749 - pseudogene predicted gene, 17821
Gm47452 12 67822018 to 67822396 378 - pseudogene predicted gene, 47452
D12Mit75 12 67904059 to 67904310 251 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 75
Gm20102 12 67926041 to 67926259 218 - pseudogene predicted gene, 20102
D12Mit1005 12 67927093 to 67927233 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1005
Gm47453 12 68047704 to 68067037 19333 - lincRNA gene predicted gene, 47453
Hspe1-ps1 12 68090407 to 68091074 667 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 1
D12Mit137 12 68151283 to 68151410 127 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 137
D12Jpk2 12 68174063 to 68174194 131 DNA segment DNA segment, Chr 12, Japan, Kominami 2
D12Mit248 12 68237339 to 68237462 123 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 248
Gm47454 12 68332622 to 68333830 1208 + unclassified gene predicted gene, 47454
Gm47456 12 68340465 to 68445833 105368 - lincRNA gene predicted gene, 47456
Tssr113615 12 68424501 to 68424507 6 + TSS region transcription start site region 113615
D12Mit35.1 12 68430093 to 68430226 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 35.1
D12Mit35 12 68430220 to 68430376 156 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 35
Gm47457 12 68435808 to 68440282 4474 - unclassified gene predicted gene, 47457
Gm19176 12 68499386 to 68501210 1824 - pseudogene predicted gene, 19176
Gm47489 12 68511818 to 68532231 20413 - lincRNA gene predicted gene, 47489
Gm19047 12 68536787 to 68537821 1034 + pseudogene predicted gene, 19047
Gm47490 12 68546647 to 68547329 682 + pseudogene predicted gene, 47490
n-R5s61 12 68600970 to 68601087 117 + rRNA gene nuclear encoded rRNA 5S 61
D12Jcs18 12 68611543 to 68611847 304 DNA segment DNA segment, Chr 12, John C. Schimenti 18
D12Mit71 12 68646835 to 68646975 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 71
Gm31307 12 68650834 to 68662633 11799 + lncRNA gene predicted gene, 31307
Gm47491 12 68811184 to 68812297 1113 - pseudogene predicted gene, 47491
Gm47515 12 68896529 to 68994970 98441 - lincRNA gene predicted gene, 47515
Gm2912 12 68970570 to 68989377 18807 + lincRNA gene predicted gene 2912
Cpgi4685 12 69087600 to 69087969 369 CpG island CpG island 4685
Gm47518 12 69115014 to 69120347 5333 - lincRNA gene predicted gene, 47518
Tssr113616 12 69122974 to 69122986 12 + TSS region transcription start site region 113616
Gm7868 12 69123101 to 69123777 676 + pseudogene predicted gene 7868
Tssr113617 12 69129829 to 69129860 31 + TSS region transcription start site region 113617
Gm31447 12 69129836 to 69145076 15240 + lincRNA gene predicted gene, 31447
Gm15571 12 69141430 to 69142066 636 - pseudogene predicted gene 15571
Gm24499 12 69152274 to 69152377 103 - snRNA gene predicted gene, 24499
Rps29 12 69157722 to 69159186 1464 - protein coding gene ribosomal protein S29
Cpgi4686 12 69158517 to 69159322 805 CpG island CpG island 4686
Tssr116482 12 69159109 to 69159133 24 - TSS region transcription start site region 116482
Tssr113618 12 69159281 to 69159296 15 + TSS region transcription start site region 113618
Rn7s1 12 69159295 to 69159593 298 + SRP RNA gene 7S RNA 1
Gm47287 12 69159437 to 69159506 69 + miRNA gene predicted gene, 47287
Gm47295 12 69159518 to 69159596 78 + miRNA gene predicted gene, 47295
Cpgi4687 12 69168485 to 69169246 761 CpG island CpG island 4687
Tssr113619 12 69168808 to 69168839 31 + TSS region transcription start site region 113619
Lrr1 12 69168814 to 69179009 10195 + protein coding gene leucine rich repeat protein 1
Tssr113620 12 69168841 to 69168854 13 + TSS region transcription start site region 113620
Rpl36al 12 69182734 to 69184067 1333 - protein coding gene ribosomal protein L36A-like
Gm49383 12 69182834 to 69197104 14270 - protein coding gene predicted gene, 49383
Cpgi4688 12 69183499 to 69185313 1814 CpG island CpG island 4688
Tssr116483 12 69184025 to 69184051 26 - TSS region transcription start site region 116483
Tssr116484 12 69184056 to 69184065 9 - TSS region transcription start site region 116484
Mgat2 12 69184157 to 69186770 2613 + protein coding gene mannoside acetylglucosaminyltransferase 2
Tssr113621 12 69184159 to 69184170 11 + TSS region transcription start site region 113621
Tssr113622 12 69184177 to 69184218 41 + TSS region transcription start site region 113622
Tssr116485 12 69184420 to 69184438 18 - TSS region transcription start site region 116485
Tssr116486 12 69184439 to 69184460 21 - TSS region transcription start site region 116486
Dnaaf2 12 69189087 to 69198429 9342 - protein coding gene dynein, axonemal assembly factor 2
Gm49384 12 69189839 to 69204267 14428 - protein coding gene predicted gene, 49384
D12Mit70 12 69190446 to 69190616 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 70
Cpgi4689 12 69196651 to 69198470 1819 CpG island CpG island 4689
Tssr116487 12 69197054 to 69197070 16 - TSS region transcription start site region 116487
Tssr116488 12 69197098 to 69197117 19 - TSS region transcription start site region 116488
Tssr116489 12 69197127 to 69197157 30 - TSS region transcription start site region 116489
Tssr3854 12 69197164 to 69197197 33 + TSS region transcription start site region 3854
Tssr113623 12 69197200 to 69197253 53 + TSS region transcription start site region 113623
9330151L19Rik 12 69197211 to 69199867 2656 + bidirectional promoter lncRNA gene RIKEN cDNA 9330151L19 gene
Tssr116490 12 69197607 to 69197615 8 - TSS region transcription start site region 116490
Tssr116491 12 69198371 to 69198385 14 - TSS region transcription start site region 116491
Tssr116492 12 69198401 to 69198416 15 - TSS region transcription start site region 116492
Tssr116493 12 69198419 to 69198420 1 - TSS region transcription start site region 116493
Pole2 12 69201773 to 69228195 26422 - protein coding gene polymerase (DNA directed), epsilon 2 (p59 subunit)
Cpgi4690 12 69227775 to 69228286 511 CpG island CpG island 4690
Gm47545 12 69227926 to 69238284 10358 + antisense lncRNA gene predicted gene, 47545
Tssr116494 12 69228167 to 69228184 17 - TSS region transcription start site region 116494
Tssr113624 12 69228632 to 69228641 9 + TSS region transcription start site region 113624
Klhdc1 12 69241176 to 69284632 43456 + protein coding gene kelch domain containing 1
Cpgi4691 12 69241551 to 69242402 851 CpG island CpG island 4691
Tssr113625 12 69241841 to 69241901 60 + TSS region transcription start site region 113625
Tssr116495 12 69241959 to 69242004 45 - TSS region transcription start site region 116495
Tssr113626 12 69258159 to 69258168 9 + TSS region transcription start site region 113626
Tssr113627 12 69258171 to 69258182 11 + TSS region transcription start site region 113627
Tssr113628 12 69258187 to 69258194 7 + TSS region transcription start site region 113628
Gm15561 12 69267771 to 69273432 5661 - antisense lncRNA gene predicted gene 15561
Tssr113629 12 69295982 to 69295992 10 + TSS region transcription start site region 113629
Cpgi4692 12 69296418 to 69297539 1121 CpG island CpG island 4692
Tssr113630 12 69296676 to 69296798 122 + TSS region transcription start site region 113630
Klhdc2 12 69296681 to 69310687 14006 + protein coding gene kelch domain containing 2
Tssr113631 12 69296831 to 69296904 73 + TSS region transcription start site region 113631
Tssr113632 12 69296928 to 69296933 5 + TSS region transcription start site region 113632
Tssr113633 12 69296938 to 69296943 5 + TSS region transcription start site region 113633
Tssr113634 12 69296964 to 69296971 7 + TSS region transcription start site region 113634
Tssr113635 12 69296972 to 69296990 18 + TSS region transcription start site region 113635
Tssr116496 12 69297234 to 69297245 11 - TSS region transcription start site region 116496
Tssr113636 12 69297399 to 69297446 47 + TSS region transcription start site region 113636
Tssr113637 12 69302342 to 69302361 19 + TSS region transcription start site region 113637
Tssr113638 12 69310521 to 69310526 5 + TSS region transcription start site region 113638
Nemf 12 69311543 to 69357176 45633 - protein coding gene nuclear export mediator factor
Tssr116497 12 69318135 to 69318148 13 - TSS region transcription start site region 116497
Tssr116498 12 69318570 to 69318581 11 - TSS region transcription start site region 116498
Tssr116499 12 69320399 to 69320402 3 - TSS region transcription start site region 116499
Tssr116500 12 69322256 to 69322268 12 - TSS region transcription start site region 116500
Tssr116501 12 69322288 to 69322303 15 - TSS region transcription start site region 116501
Tssr116502 12 69344154 to 69344190 36 - TSS region transcription start site region 116502
Cpgi4693 12 69356593 to 69357284 691 CpG island CpG island 4693
Tssr116503 12 69357109 to 69357116 7 - TSS region transcription start site region 116503
Tssr116504 12 69357120 to 69357181 61 - TSS region transcription start site region 116504
Gm47299 12 69361179 to 69361258 79 - miRNA gene predicted gene, 47299
Rn7s2 12 69361183 to 69361481 298 - SRP RNA gene 7S RNA 2
Gm47305 12 69361270 to 69361339 69 - miRNA gene predicted gene, 47305
Cpgi4694 12 69361462 to 69361808 346 CpG island CpG island 4694
Cpgi4695 12 69364104 to 69364457 353 CpG island CpG island 4695
Tssr113639 12 69364338 to 69364360 22 + TSS region transcription start site region 113639
Gm18113 12 69369514 to 69370023 509 - pseudogene predicted gene, 18113
Cpgi4696 12 69371514 to 69373313 1799 CpG island CpG island 4696
Gm9887 12 69371835 to 69372458 623 - protein coding gene predicted gene 9887
Tssr116505 12 69371942 to 69372007 65 - TSS region transcription start site region 116505
Tssr113640 12 69372051 to 69372062 11 + TSS region transcription start site region 113640
Tssr113641 12 69372112 to 69372172 60 + TSS region transcription start site region 113641
Arf6 12 69372150 to 69373783 1633 + protein coding gene ADP-ribosylation factor 6
Tssr116506 12 69372443 to 69372540 97 - TSS region transcription start site region 116506
Tssr113642 12 69372545 to 69372645 100 + TSS region transcription start site region 113642
Tssr113643 12 69373493 to 69373507 14 + TSS region transcription start site region 113643
Tssr113644 12 69374597 to 69374621 24 + TSS region transcription start site region 113644
Tssr113645 12 69374899 to 69374910 11 + TSS region transcription start site region 113645
Tssr113646 12 69375573 to 69375577 4 + TSS region transcription start site region 113646
Tssr116507 12 69402842 to 69402847 5 - TSS region transcription start site region 116507
Tssr113647 12 69447708 to 69447712 4 + TSS region transcription start site region 113647
Gm40434 12 69461787 to 69462846 1059 + lncRNA gene predicted gene, 40434
5830428M24Rik 12 69464787 to 69475550 10763 - lncRNA gene RIKEN cDNA 5830428M24 gene
Tssr116508 12 69475510 to 69475555 45 - TSS region transcription start site region 116508
Tssr116509 12 69475567 to 69475588 21 - TSS region transcription start site region 116509
Cpgi4697 12 69476860 to 69477066 206 CpG island CpG island 4697
Gm31512 12 69497067 to 69506741 9674 + lncRNA gene predicted gene, 31512
Tssr113648 12 69502537 to 69502588 51 + TSS region transcription start site region 113648
Tssr116510 12 69537841 to 69537851 10 - TSS region transcription start site region 116510
Tssr113649 12 69538188 to 69538193 5 + TSS region transcription start site region 113649
Tssr113650 12 69538286 to 69538299 13 + TSS region transcription start site region 113650
Tssr116511 12 69541736 to 69541745 9 - TSS region transcription start site region 116511
Gm46353 12 69551118 to 69554519 3401 + protein coding gene predicted gene, 46353
Gm23018 12 69561229 to 69561337 108 - miRNA gene predicted gene, 23018
Vcpkmt 12 69577628 to 69583028 5400 - protein coding gene valosin containing protein lysine (K) methyltransferase
Cpgi4698 12 69582242 to 69583400 1158 CpG island CpG island 4698
Tssr116512 12 69582985 to 69583050 65 - TSS region transcription start site region 116512
Sos2 12 69583762 to 69681852 98090 - protein coding gene SOS Ras/Rho guanine nucleotide exchange factor 2
Tssr116513 12 69584546 to 69584580 34 - TSS region transcription start site region 116513
Gm24449 12 69586153 to 69586258 105 - snRNA gene predicted gene, 24449
Tssr116514 12 69596819 to 69596822 3 - TSS region transcription start site region 116514
Tssr113651 12 69597760 to 69597767 7 + TSS region transcription start site region 113651
Tssr116515 12 69607307 to 69607316 9 - TSS region transcription start site region 116515
Gm31679 12 69622309 to 69625603 3294 - protein coding gene predicted gene, 31679
Gm31598 12 69674506 to 69676969 2463 - pseudogene predicted gene, 31598
Tssr113652 12 69680866 to 69680877 11 + TSS region transcription start site region 113652
Cpgi4699 12 69681027 to 69682608 1581 CpG island CpG island 4699
Tssr116516 12 69681795 to 69681869 74 - TSS region transcription start site region 116516
Tssr116517 12 69682138 to 69682182 44 - TSS region transcription start site region 116517
Tssr116518 12 69682183 to 69682226 43 - TSS region transcription start site region 116518
Tssr116519 12 69682243 to 69682258 15 - TSS region transcription start site region 116519
Tssr116520 12 69683698 to 69683711 13 - TSS region transcription start site region 116520
L2hgdh 12 69690436 to 69724874 34438 - protein coding gene L-2-hydroxyglutarate dehydrogenase
Gm46354 12 69693313 to 69694040 727 - pseudogene predicted gene, 46354
Cpgi4700 12 69724421 to 69725376 955 CpG island CpG island 4700
Tssr116521 12 69724830 to 69724885 55 - TSS region transcription start site region 116521
Tssr113653 12 69724939 to 69724986 47 + TSS region transcription start site region 113653
Dmac2l 12 69724950 to 69744660 19710 + protein coding gene distal membrane arm assembly complex 2 like
Tssr113654 12 69724987 to 69725004 17 + TSS region transcription start site region 113654
Tssr116522 12 69746335 to 69746345 10 - TSS region transcription start site region 116522
Cdkl1 12 69746848 to 69791267 44419 - protein coding gene cyclin-dependent kinase-like 1 (CDC2-related kinase)
Cpgi4701 12 69757818 to 69758162 344 CpG island CpG island 4701
Tssr116523 12 69758647 to 69758673 26 - TSS region transcription start site region 116523
Mir681 12 69763835 to 69763944 109 - miRNA gene microRNA 681
Tssr116524 12 69767287 to 69767292 5 - TSS region transcription start site region 116524
Tssr116525 12 69769303 to 69769307 4 - TSS region transcription start site region 116525
Tssr116526 12 69769733 to 69769742 9 - TSS region transcription start site region 116526
Tssr116527 12 69790255 to 69790273 18 - TSS region transcription start site region 116527
Tssr116528 12 69790274 to 69790276 2 - TSS region transcription start site region 116528