Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:65112296-70112481

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313 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa10 12 35041005 to 65464245 30423240 QTL B.burgdorferi-associated arthritis 10
Fancm 12 65075603 to 65132058 56455 + protein coding gene Fanconi anemia, complementation group M
Tssr113606 12 65113089 to 65113104 15 + TSS region transcription start site region 113606
Mis18bp1 12 65132734 to 65172580 39846 - protein coding gene MIS18 binding protein 1
Tssr116466 12 65159203 to 65159205 2 - TSS region transcription start site region 116466
Cpgi4679 12 65172218 to 65172955 737 CpG island CpG island 4679
Tssr116467 12 65172541 to 65172552 11 - TSS region transcription start site region 116467
Tssr116468 12 65172560 to 65172618 58 - TSS region transcription start site region 116468
4930471E15Rik 12 65182380 to 65186387 4007 + lincRNA gene RIKEN cDNA 4930471E15 gene
Tssr113607 12 65182562 to 65182572 10 + TSS region transcription start site region 113607
Gm31063 12 65190613 to 65202551 11938 - lincRNA gene predicted gene, 31063
Tssr116469 12 65213506 to 65213514 8 - TSS region transcription start site region 116469
Tssr113608 12 65225483 to 65225494 11 + TSS region transcription start site region 113608
Tssr113609 12 65225513 to 65225544 31 + TSS region transcription start site region 113609
Wdr20rt 12 65225517 to 65228454 2937 + protein coding gene WD repeat domain 20, retrogene
Cpgi4680 12 65225646 to 65226230 584 CpG island CpG island 4680
Tssr113610 12 65225723 to 65225744 21 + TSS region transcription start site region 113610
Tssr113611 12 65225747 to 65225757 10 + TSS region transcription start site region 113611
Cpgi4681 12 65226825 to 65227000 175 CpG island CpG island 4681
Gm47973 12 65251710 to 65251908 198 + pseudogene predicted gene, 47973
Gm26015 12 65405846 to 65405970 124 - snoRNA gene predicted gene, 26015
D12Mit210 12 65424881 to 65425026 145 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 210
D12Mit69 12 65464142 to 65464245 103 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 69
D12Mit68 12 65475933 to 65476114 181 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 68
Gm25599 12 65530252 to 65530354 102 + snRNA gene predicted gene, 25599
Gm23948 12 65562163 to 65562294 131 - snoRNA gene predicted gene, 23948
Gm22782 12 65566090 to 65566221 131 + snoRNA gene predicted gene, 22782
Gm47975 12 65968376 to 65968601 225 + unclassified gene predicted gene, 47975
Gm2915 12 66269265 to 66270051 786 + pseudogene predicted gene 2915
Rpl10l 12 66283379 to 66284401 1022 - protein coding gene ribosomal protein L10-like
Cpgi4682 12 66283881 to 66284503 622 CpG island CpG island 4682
Tssr116470 12 66284394 to 66284412 18 - TSS region transcription start site region 116470
Tssr116471 12 66284416 to 66284429 13 - TSS region transcription start site region 116471
Gm47979 12 66333502 to 66368385 34883 - lincRNA gene predicted gene, 47979
Tssr3852 12 66420994 to 66420999 5 + TSS region transcription start site region 3852
Gm47982 12 66456103 to 66458442 2339 - unclassified gene predicted gene, 47982
Mdga2 12 66466060 to 67222549 756489 - protein coding gene MAM domain containing glycosylphosphatidylinositol anchor 2
Gm19001 12 66482506 to 66484156 1650 + pseudogene predicted gene, 19001
Gm47988 12 66501762 to 66502546 784 - unclassified gene predicted gene, 47988
Tssr116472 12 66560952 to 66560981 29 - TSS region transcription start site region 116472
Gm23826 12 66561254 to 66561372 118 - snoRNA gene predicted gene, 23826
B230119K15Rik 12 66572707 to 66573988 1281 unclassified gene RIKEN cDNA B230119K15 gene
Gm18940 12 66845590 to 66846460 870 + pseudogene predicted gene, 18940
Gm47989 12 66942411 to 66942521 110 + unclassified gene predicted gene, 47989
Tssr113612 12 66952224 to 66952236 12 + TSS region transcription start site region 113612
Tssr113613 12 67059181 to 67059193 12 + TSS region transcription start site region 113613
Cpgi4683 12 67059204 to 67059588 384 CpG island CpG island 4683
Tssr3853 12 67059250 to 67059297 47 + TSS region transcription start site region 3853
Tssr116473 12 67059401 to 67059451 50 - TSS region transcription start site region 116473
Tssr116474 12 67059897 to 67059923 26 - TSS region transcription start site region 116474
Tssr116475 12 67082116 to 67082123 7 - TSS region transcription start site region 116475
Tssr116476 12 67110586 to 67110589 3 - TSS region transcription start site region 116476
Gm47987 12 67120126 to 67122920 2794 - unclassified gene predicted gene, 47987
Tssr116477 12 67122899 to 67122902 3 - TSS region transcription start site region 116477
Tssr116478 12 67193940 to 67193983 43 - TSS region transcription start site region 116478
Tssr116479 12 67209520 to 67209524 4 - TSS region transcription start site region 116479
Cpgi4684 12 67220670 to 67223016 2346 CpG island CpG island 4684
Tssr116480 12 67222550 to 67222578 28 - TSS region transcription start site region 116480
Tssr116481 12 67222589 to 67222600 11 - TSS region transcription start site region 116481
Gm48059 12 67345588 to 67345750 162 - pseudogene predicted gene, 48059
Gm48060 12 67427947 to 67428244 297 - pseudogene predicted gene, 48060
n-R5s60 12 67489113 to 67489231 118 - rRNA gene nuclear encoded rRNA 5S 60
Rpl17-ps3 12 67510756 to 67511311 555 + pseudogene ribosomal protein L17, pseudogene 3
Lfibq16 12 67568130 to 68024081 455951 QTL liver fibrosis QTL 16
Gm26256 12 67612296 to 67612481 185 + snRNA gene predicted gene, 26256
Tssr113614 12 67651373 to 67651376 3 + TSS region transcription start site region 113614
Gm47432 12 67651385 to 67658263 6878 + lincRNA gene predicted gene, 47432
Gm17821 12 67658527 to 67669276 10749 - pseudogene predicted gene, 17821
Gm47452 12 67822018 to 67822396 378 - pseudogene predicted gene, 47452
D12Mit75 12 67904059 to 67904310 251 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 75
Gm20102 12 67926041 to 67926259 218 - pseudogene predicted gene, 20102
D12Mit1005 12 67927093 to 67927233 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1005
Gm47453 12 68047704 to 68067037 19333 - lincRNA gene predicted gene, 47453
Hspe1-ps1 12 68090407 to 68091074 667 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 1
D12Mit137 12 68151283 to 68151410 127 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 137
D12Jpk2 12 68174063 to 68174194 131 DNA segment DNA segment, Chr 12, Japan, Kominami 2
D12Mit248 12 68237339 to 68237462 123 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 248
Gm47454 12 68332622 to 68333830 1208 + unclassified gene predicted gene, 47454
Gm47456 12 68340465 to 68445833 105368 - lincRNA gene predicted gene, 47456
Tssr113615 12 68424501 to 68424507 6 + TSS region transcription start site region 113615
D12Mit35.1 12 68430093 to 68430226 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 35.1
D12Mit35 12 68430220 to 68430376 156 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 35
Gm47457 12 68435808 to 68440282 4474 - unclassified gene predicted gene, 47457
Gm19176 12 68499386 to 68501210 1824 - pseudogene predicted gene, 19176
Gm47489 12 68511818 to 68532231 20413 - lincRNA gene predicted gene, 47489
Gm19047 12 68536787 to 68537821 1034 + pseudogene predicted gene, 19047
Gm47490 12 68546647 to 68547329 682 + pseudogene predicted gene, 47490
n-R5s61 12 68600970 to 68601087 117 + rRNA gene nuclear encoded rRNA 5S 61
D12Jcs18 12 68611543 to 68611847 304 DNA segment DNA segment, Chr 12, John C. Schimenti 18
D12Mit71 12 68646835 to 68646975 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 71
Gm31307 12 68650834 to 68662633 11799 + lncRNA gene predicted gene, 31307
Gm47491 12 68811184 to 68812297 1113 - pseudogene predicted gene, 47491
Gm47515 12 68896529 to 68994970 98441 - lincRNA gene predicted gene, 47515
Gm2912 12 68970570 to 68989377 18807 + lincRNA gene predicted gene 2912
Cpgi4685 12 69087600 to 69087969 369 CpG island CpG island 4685
Gm47518 12 69115014 to 69120347 5333 - lincRNA gene predicted gene, 47518
Tssr113616 12 69122974 to 69122986 12 + TSS region transcription start site region 113616
Gm7868 12 69123101 to 69123777 676 + pseudogene predicted gene 7868
Tssr113617 12 69129829 to 69129860 31 + TSS region transcription start site region 113617
Gm31447 12 69129836 to 69145076 15240 + lincRNA gene predicted gene, 31447
Gm15571 12 69141430 to 69142066 636 - pseudogene predicted gene 15571
Gm24499 12 69152274 to 69152377 103 - snRNA gene predicted gene, 24499
Rps29 12 69157722 to 69159186 1464 - protein coding gene ribosomal protein S29
Cpgi4686 12 69158517 to 69159322 805 CpG island CpG island 4686
Tssr116482 12 69159109 to 69159133 24 - TSS region transcription start site region 116482
Tssr113618 12 69159281 to 69159296 15 + TSS region transcription start site region 113618
Rn7s1 12 69159295 to 69159593 298 + SRP RNA gene 7S RNA 1
Gm47287 12 69159437 to 69159506 69 + miRNA gene predicted gene, 47287
Gm47295 12 69159518 to 69159596 78 + miRNA gene predicted gene, 47295
Cpgi4687 12 69168485 to 69169246 761 CpG island CpG island 4687
Tssr113619 12 69168808 to 69168839 31 + TSS region transcription start site region 113619
Lrr1 12 69168814 to 69179009 10195 + protein coding gene leucine rich repeat protein 1
Tssr113620 12 69168841 to 69168854 13 + TSS region transcription start site region 113620
Rpl36al 12 69182734 to 69184067 1333 - protein coding gene ribosomal protein L36A-like
Gm49383 12 69182834 to 69197104 14270 - protein coding gene predicted gene, 49383
Cpgi4688 12 69183499 to 69185313 1814 CpG island CpG island 4688
Tssr116483 12 69184025 to 69184051 26 - TSS region transcription start site region 116483
Tssr116484 12 69184056 to 69184065 9 - TSS region transcription start site region 116484
Mgat2 12 69184157 to 69186770 2613 + protein coding gene mannoside acetylglucosaminyltransferase 2
Tssr113621 12 69184159 to 69184170 11 + TSS region transcription start site region 113621
Tssr113622 12 69184177 to 69184218 41 + TSS region transcription start site region 113622
Tssr116485 12 69184420 to 69184438 18 - TSS region transcription start site region 116485
Tssr116486 12 69184439 to 69184460 21 - TSS region transcription start site region 116486
Dnaaf2 12 69189087 to 69198429 9342 - protein coding gene dynein, axonemal assembly factor 2
Gm49384 12 69189839 to 69204267 14428 - protein coding gene predicted gene, 49384
D12Mit70 12 69190446 to 69190616 170 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 70
Cpgi4689 12 69196651 to 69198470 1819 CpG island CpG island 4689
Tssr116487 12 69197054 to 69197070 16 - TSS region transcription start site region 116487
Tssr116488 12 69197098 to 69197117 19 - TSS region transcription start site region 116488
Tssr116489 12 69197127 to 69197157 30 - TSS region transcription start site region 116489
Tssr3854 12 69197164 to 69197197 33 + TSS region transcription start site region 3854
Tssr113623 12 69197200 to 69197253 53 + TSS region transcription start site region 113623
9330151L19Rik 12 69197211 to 69199867 2656 + bidirectional promoter lncRNA gene RIKEN cDNA 9330151L19 gene
Tssr116490 12 69197607 to 69197615 8 - TSS region transcription start site region 116490
Tssr116491 12 69198371 to 69198385 14 - TSS region transcription start site region 116491
Tssr116492 12 69198401 to 69198416 15 - TSS region transcription start site region 116492
Tssr116493 12 69198419 to 69198420 1 - TSS region transcription start site region 116493
Pole2 12 69201773 to 69228195 26422 - protein coding gene polymerase (DNA directed), epsilon 2 (p59 subunit)
Cpgi4690 12 69227775 to 69228286 511 CpG island CpG island 4690
Gm47545 12 69227926 to 69238284 10358 + antisense lncRNA gene predicted gene, 47545
Tssr116494 12 69228167 to 69228184 17 - TSS region transcription start site region 116494
Tssr113624 12 69228632 to 69228641 9 + TSS region transcription start site region 113624
Klhdc1 12 69241176 to 69284632 43456 + protein coding gene kelch domain containing 1
Cpgi4691 12 69241551 to 69242402 851 CpG island CpG island 4691
Tssr113625 12 69241841 to 69241901 60 + TSS region transcription start site region 113625
Tssr116495 12 69241959 to 69242004 45 - TSS region transcription start site region 116495
Tssr113626 12 69258159 to 69258168 9 + TSS region transcription start site region 113626
Tssr113627 12 69258171 to 69258182 11 + TSS region transcription start site region 113627
Tssr113628 12 69258187 to 69258194 7 + TSS region transcription start site region 113628
Gm15561 12 69267771 to 69273432 5661 - antisense lncRNA gene predicted gene 15561
Tssr113629 12 69295982 to 69295992 10 + TSS region transcription start site region 113629
Cpgi4692 12 69296418 to 69297539 1121 CpG island CpG island 4692
Tssr113630 12 69296676 to 69296798 122 + TSS region transcription start site region 113630
Klhdc2 12 69296681 to 69310687 14006 + protein coding gene kelch domain containing 2
Tssr113631 12 69296831 to 69296904 73 + TSS region transcription start site region 113631
Tssr113632 12 69296928 to 69296933 5 + TSS region transcription start site region 113632
Tssr113633 12 69296938 to 69296943 5 + TSS region transcription start site region 113633
Tssr113634 12 69296964 to 69296971 7 + TSS region transcription start site region 113634
Tssr113635 12 69296972 to 69296990 18 + TSS region transcription start site region 113635
Tssr116496 12 69297234 to 69297245 11 - TSS region transcription start site region 116496
Tssr113636 12 69297399 to 69297446 47 + TSS region transcription start site region 113636
Tssr113637 12 69302342 to 69302361 19 + TSS region transcription start site region 113637
Tssr113638 12 69310521 to 69310526 5 + TSS region transcription start site region 113638
Nemf 12 69311543 to 69357176 45633 - protein coding gene nuclear export mediator factor
Tssr116497 12 69318135 to 69318148 13 - TSS region transcription start site region 116497
Tssr116498 12 69318570 to 69318581 11 - TSS region transcription start site region 116498
Tssr116499 12 69320399 to 69320402 3 - TSS region transcription start site region 116499
Tssr116500 12 69322256 to 69322268 12 - TSS region transcription start site region 116500
Tssr116501 12 69322288 to 69322303 15 - TSS region transcription start site region 116501
Tssr116502 12 69344154 to 69344190 36 - TSS region transcription start site region 116502
Cpgi4693 12 69356593 to 69357284 691 CpG island CpG island 4693
Tssr116503 12 69357109 to 69357116 7 - TSS region transcription start site region 116503
Tssr116504 12 69357120 to 69357181 61 - TSS region transcription start site region 116504
Gm47299 12 69361179 to 69361258 79 - miRNA gene predicted gene, 47299
Rn7s2 12 69361183 to 69361481 298 - SRP RNA gene 7S RNA 2
Gm47305 12 69361270 to 69361339 69 - miRNA gene predicted gene, 47305
Cpgi4694 12 69361462 to 69361808 346 CpG island CpG island 4694
Cpgi4695 12 69364104 to 69364457 353 CpG island CpG island 4695
Tssr113639 12 69364338 to 69364360 22 + TSS region transcription start site region 113639
Gm18113 12 69369514 to 69370023 509 - pseudogene predicted gene, 18113
Cpgi4696 12 69371514 to 69373313 1799 CpG island CpG island 4696
Gm9887 12 69371835 to 69372458 623 - protein coding gene predicted gene 9887
Tssr116505 12 69371942 to 69372007 65 - TSS region transcription start site region 116505
Tssr113640 12 69372051 to 69372062 11 + TSS region transcription start site region 113640
Tssr113641 12 69372112 to 69372172 60 + TSS region transcription start site region 113641
Arf6 12 69372150 to 69373783 1633 + protein coding gene ADP-ribosylation factor 6
Tssr116506 12 69372443 to 69372540 97 - TSS region transcription start site region 116506
Tssr113642 12 69372545 to 69372645 100 + TSS region transcription start site region 113642
Tssr113643 12 69373493 to 69373507 14 + TSS region transcription start site region 113643
Tssr113644 12 69374597 to 69374621 24 + TSS region transcription start site region 113644
Tssr113645 12 69374899 to 69374910 11 + TSS region transcription start site region 113645
Tssr113646 12 69375573 to 69375577 4 + TSS region transcription start site region 113646
Tssr116507 12 69402842 to 69402847 5 - TSS region transcription start site region 116507
Tssr113647 12 69447708 to 69447712 4 + TSS region transcription start site region 113647
Gm40434 12 69461787 to 69462846 1059 + lncRNA gene predicted gene, 40434
5830428M24Rik 12 69464787 to 69475550 10763 - lncRNA gene RIKEN cDNA 5830428M24 gene
Tssr116508 12 69475510 to 69475555 45 - TSS region transcription start site region 116508
Tssr116509 12 69475567 to 69475588 21 - TSS region transcription start site region 116509
Cpgi4697 12 69476860 to 69477066 206 CpG island CpG island 4697
Gm31512 12 69497067 to 69506741 9674 + lncRNA gene predicted gene, 31512