Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:64842218-65502955

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa10 12 35041005 to 65464245 30423240 QTL B.burgdorferi-associated arthritis 10
Rpl7a-ps1 12 64876836 to 64877628 792 - pseudogene ribosomal protein L7A, pseudogene 1
Cpgi4674 12 64917645 to 64918655 1010 CpG island CpG island 4674
Tssr113591 12 64917838 to 64917870 32 + TSS region transcription start site region 113591
Tssr113592 12 64917901 to 64917944 43 + TSS region transcription start site region 113592
Gm527 12 64917911 to 64924591 6680 + protein coding gene predicted gene 527
Tssr113593 12 64917945 to 64917989 44 + TSS region transcription start site region 113593
Tssr113594 12 64917991 to 64918001 10 + TSS region transcription start site region 113594
Klhl28 12 64941486 to 64965605 24119 - protein coding gene kelch-like 28
Tssr116461 12 64963364 to 64963374 10 - TSS region transcription start site region 116461
Cpgi4675 12 64965451 to 64966692 1241 CpG island CpG island 4675
Tssr116462 12 64965496 to 64965538 42 - TSS region transcription start site region 116462
Tssr113595 12 64965756 to 64965775 19 + TSS region transcription start site region 113595
Tssr113596 12 64965777 to 64965788 11 + TSS region transcription start site region 113596
Tssr113597 12 64965791 to 64965810 19 + TSS region transcription start site region 113597
Togaram1 12 64965804 to 65022573 56769 + protein coding gene TOG array regulator of axonemal microtubules 1
Tssr113598 12 64969301 to 64969308 7 + TSS region transcription start site region 113598
Gm48559 12 64980630 to 64982936 2306 - antisense lncRNA gene predicted gene, 48559
Tssr113599 12 65021819 to 65021835 16 + TSS region transcription start site region 113599
Cpgi4676 12 65036155 to 65036786 631 CpG island CpG island 4676
Tssr113600 12 65036319 to 65036358 39 + TSS region transcription start site region 113600
Prpf39 12 65036333 to 65063386 27053 + protein coding gene pre-mRNA processing factor 39
Tssr113601 12 65036827 to 65036833 6 + TSS region transcription start site region 113601
Tssr113602 12 65039732 to 65039742 10 + TSS region transcription start site region 113602
Tssr113603 12 65049188 to 65049198 10 + TSS region transcription start site region 113603
Gm25970 12 65056573 to 65056658 85 + snoRNA gene predicted gene, 25970
Tssr113604 12 65061731 to 65061734 3 + TSS region transcription start site region 113604
Fkbp3 12 65062432 to 65073938 11506 - protein coding gene FK506 binding protein 3
Tssr116463 12 65066667 to 65066716 49 - TSS region transcription start site region 116463
Tssr116464 12 65071099 to 65071102 3 - TSS region transcription start site region 116464
Cpgi4677 12 65073353 to 65074339 986 CpG island CpG island 4677
Tssr116465 12 65073927 to 65073954 27 - TSS region transcription start site region 116465
Gm47870 12 65074990 to 65076315 1325 - unclassified gene predicted gene, 47870
Cpgi4678 12 65075345 to 65076177 832 CpG island CpG island 4678
Tssr113605 12 65075582 to 65075617 35 + TSS region transcription start site region 113605
Fancm 12 65075603 to 65132058 56455 + protein coding gene Fanconi anemia, complementation group M
Gm47869 12 65099844 to 65100006 162 - pseudogene predicted gene, 47869
Tssr113606 12 65113089 to 65113104 15 + TSS region transcription start site region 113606
Mis18bp1 12 65132734 to 65172580 39846 - protein coding gene MIS18 binding protein 1
Tssr116466 12 65159203 to 65159205 2 - TSS region transcription start site region 116466
Cpgi4679 12 65172218 to 65172955 737 CpG island CpG island 4679
Tssr116467 12 65172541 to 65172552 11 - TSS region transcription start site region 116467
Tssr116468 12 65172560 to 65172618 58 - TSS region transcription start site region 116468
4930471E15Rik 12 65182380 to 65186387 4007 + lincRNA gene RIKEN cDNA 4930471E15 gene
Tssr113607 12 65182562 to 65182572 10 + TSS region transcription start site region 113607
Gm31063 12 65190613 to 65202551 11938 - lincRNA gene predicted gene, 31063
Tssr116469 12 65213506 to 65213514 8 - TSS region transcription start site region 116469
Tssr113608 12 65225483 to 65225494 11 + TSS region transcription start site region 113608
Tssr113609 12 65225513 to 65225544 31 + TSS region transcription start site region 113609
Wdr20rt 12 65225517 to 65228454 2937 + protein coding gene WD repeat domain 20, retrogene
Cpgi4680 12 65225646 to 65226230 584 CpG island CpG island 4680
Tssr113610 12 65225723 to 65225744 21 + TSS region transcription start site region 113610
Tssr113611 12 65225747 to 65225757 10 + TSS region transcription start site region 113611
Cpgi4681 12 65226825 to 65227000 175 CpG island CpG island 4681
Gm47973 12 65251710 to 65251908 198 + pseudogene predicted gene, 47973
Gm26015 12 65405846 to 65405970 124 - snoRNA gene predicted gene, 26015
D12Mit210 12 65424881 to 65425026 145 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 210
D12Mit69 12 65464142 to 65464245 103 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 69
D12Mit68 12 65475933 to 65476114 181 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 68