Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:60208510-62709038

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40431 12 60187624 to 60223499 35875 + lncRNA gene predicted gene, 40431
Gm32936 12 60317888 to 60318064 176 + protein coding gene predicted gene, 32936
Gm18871 12 60324209 to 60324886 677 - pseudogene predicted gene, 18871
Gm20049 12 60423407 to 60424136 729 - pseudogene predicted gene, 20049
Gm7739 12 60526518 to 60528077 1559 + pseudogene predicted gene 7739
Gm6068 12 60547743 to 60548238 495 - pseudogene predicted gene 6068
D12Mit36 12 60655249 to 60655367 118 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 36
Tssr113572 12 60721758 to 60721762 4 + TSS region transcription start site region 113572
Gm23059 12 60735498 to 60735604 106 + snRNA gene predicted gene, 23059
Gm38172 12 60866592 to 60877295 10703 + unclassified gene predicted gene, 38172
Gm48301 12 61195126 to 61234643 39517 + lincRNA gene predicted gene, 48301
Gm48304 12 61256638 to 61256965 327 + pseudogene predicted gene, 48304
Gm48305 12 61263831 to 61264413 582 + pseudogene predicted gene, 48305
Gm7745 12 61353498 to 61354692 1194 - pseudogene predicted gene 7745
Gm45964 12 61361724 to 61398478 36754 - lncRNA gene predicted gene, 45964
Nanog-ps2 12 61458510 to 61459038 528 + pseudogene Nanog pseudogene 2
Gm20063 12 61499660 to 61521820 22160 - lincRNA gene predicted gene, 20063
Cpgi4671 12 61521610 to 61521887 277 CpG island CpG island 4671
Tssr116459 12 61521805 to 61521818 13 - TSS region transcription start site region 116459
Lrfn5 12 61522814 to 61857928 335114 + protein coding gene leucine rich repeat and fibronectin type III domain containing 5
Cpgi4672 12 61522845 to 61523563 718 CpG island CpG island 4672
Tssr113573 12 61523112 to 61523184 72 + TSS region transcription start site region 113573
Tssr113574 12 61523860 to 61523880 20 + TSS region transcription start site region 113574
Tssr113575 12 61523889 to 61523922 33 + TSS region transcription start site region 113575
Cpgi4673 12 61524341 to 61524788 447 CpG island CpG island 4673
Tssr113576 12 61524536 to 61524554 18 + TSS region transcription start site region 113576
Tssr113577 12 61524600 to 61524640 40 + TSS region transcription start site region 113577
Tssr113578 12 61528678 to 61528683 5 + TSS region transcription start site region 113578
Tssr113579 12 61534223 to 61534226 3 + TSS region transcription start site region 113579
Tssr113580 12 61571441 to 61571444 3 + TSS region transcription start site region 113580
Gm30738 12 61579674 to 61580175 501 + pseudogene predicted gene, 30738
Tssr113581 12 61586187 to 61586204 17 + TSS region transcription start site region 113581
Tssr113582 12 61603880 to 61603883 3 + TSS region transcription start site region 113582
Tssr113583 12 61610460 to 61610471 11 + TSS region transcription start site region 113583
Tssr113584 12 61631735 to 61631741 6 + TSS region transcription start site region 113584
Tssr113585 12 61698960 to 61698964 4 + TSS region transcription start site region 113585
Tssr113586 12 61716542 to 61716544 2 + TSS region transcription start site region 113586
Gm48328 12 61752546 to 61754426 1880 + unclassified gene predicted gene, 48328
Gm23213 12 61867056 to 61867368 312 + unclassified non-coding RNA gene predicted gene, 23213
Gm7753 12 61888923 to 61890604 1681 - pseudogene predicted gene 7753
Gm24750 12 61920574 to 61920677 103 + snRNA gene predicted gene, 24750
Gm48358 12 61990302 to 61991769 1467 - unclassified gene predicted gene, 48358
Gm2754 12 62065037 to 62065571 534 - pseudogene predicted gene 2754
Gm48359 12 62065564 to 62065697 133 + pseudogene predicted gene, 48359
Tssr113587 12 62065954 to 62065957 3 + TSS region transcription start site region 113587
Tssr3849 12 62066052 to 62066055 3 + TSS region transcription start site region 3849
Gm7754 12 62161956 to 62170242 8286 + pseudogene predicted gene 7754
Gm48365 12 62257849 to 62260583 2734 + pseudogene predicted gene, 48365
Gm6353 12 62365255 to 62366305 1050 + pseudogene predicted gene 6353
Gm48366 12 62372197 to 62375371 3174 - pseudogene predicted gene, 48366
Gm48367 12 62463949 to 62464279 330 - pseudogene predicted gene, 48367
Gm48368 12 62535346 to 62537149 1803 + pseudogene predicted gene, 48368
Gm24590 12 62598892 to 62599010 118 - miRNA gene predicted gene, 24590
Tssr113588 12 62687769 to 62687772 3 + TSS region transcription start site region 113588
Tssr113589 12 62687786 to 62687814 28 + TSS region transcription start site region 113589
Spanxn4 12 62687822 to 62688245 423 + protein coding gene SPANX family, member N4
Gm19134 12 62690053 to 62690539 486 - pseudogene predicted gene, 19134
Tspyl-ps 12 62703160 to 62704276 1116 - pseudogene testis-specific protein, Y-encoded-like, pseudogene