Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:58952743-62143238

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr116439 12 58953014 to 58953017 3 - TSS region transcription start site region 116439
Gm17529 12 58953089 to 58968011 14922 + antisense lncRNA gene predicted gene, 17529
Sec23a 12 58958383 to 59012017 53634 - protein coding gene SEC23 homolog A, COPII coat complex component
Tssr116440 12 58976354 to 58976358 4 - TSS region transcription start site region 116440
Cpgi4663 12 59011442 to 59012314 872 CpG island CpG island 4663
Tssr116441 12 59011877 to 59011950 73 - TSS region transcription start site region 116441
Tssr116442 12 59011975 to 59011992 17 - TSS region transcription start site region 116442
Tssr116443 12 59011996 to 59012034 38 - TSS region transcription start site region 116443
Tssr116444 12 59012096 to 59012103 7 - TSS region transcription start site region 116444
Cpgi4664 12 59013297 to 59013759 462 CpG island CpG island 4664
Tssr113541 12 59013379 to 59013398 19 + TSS region transcription start site region 113541
Gemin2 12 59013393 to 59028470 15077 + protein coding gene gem nuclear organelle associated protein 2
Tssr113542 12 59013411 to 59013462 51 + TSS region transcription start site region 113542
Cpgi4665 12 59040024 to 59040342 318 CpG island CpG island 4665
Gm22973 12 59040335 to 59040525 190 + snRNA gene predicted gene, 22973
Tssr116445 12 59040335 to 59040345 10 - TSS region transcription start site region 116445
Trappc6b 12 59043092 to 59061472 18380 - protein coding gene trafficking protein particle complex 6B
Tssr116446 12 59046121 to 59046128 7 - TSS region transcription start site region 116446
Tssr116447 12 59050800 to 59050804 4 - TSS region transcription start site region 116447
Tssr116448 12 59053852 to 59053867 15 - TSS region transcription start site region 116448
Cpgi4666 12 59060922 to 59061625 703 CpG island CpG island 4666
Tssr116449 12 59061403 to 59061412 9 - TSS region transcription start site region 116449
Tssr116450 12 59061425 to 59061477 52 - TSS region transcription start site region 116450
Tssr116451 12 59061480 to 59061483 3 - TSS region transcription start site region 116451
Cpgi4667 12 59066530 to 59067516 986 CpG island CpG island 4667
Tssr113543 12 59066873 to 59066882 9 + TSS region transcription start site region 113543
Tssr113544 12 59066896 to 59066907 11 + TSS region transcription start site region 113544
Tssr113545 12 59066908 to 59066931 23 + TSS region transcription start site region 113545
Pnn 12 59066919 to 59074017 7098 + protein coding gene pinin
Tssr113546 12 59066940 to 59067001 61 + TSS region transcription start site region 113546
Tssr116452 12 59070198 to 59070234 36 - TSS region transcription start site region 116452
Tssr113547 12 59070214 to 59070227 13 + TSS region transcription start site region 113547
Tssr113548 12 59070230 to 59070279 49 + TSS region transcription start site region 113548
Tssr116453 12 59070236 to 59070264 28 - TSS region transcription start site region 116453
Tssr113549 12 59070423 to 59070486 63 + TSS region transcription start site region 113549
Tssr113550 12 59071468 to 59071490 22 + TSS region transcription start site region 113550
Tssr113551 12 59071519 to 59071532 13 + TSS region transcription start site region 113551
Tssr113552 12 59071553 to 59071570 17 + TSS region transcription start site region 113552
Tssr113553 12 59071588 to 59071603 15 + TSS region transcription start site region 113553
Tssr116454 12 59071620 to 59071672 52 - TSS region transcription start site region 116454
Tssr113554 12 59071806 to 59071830 24 + TSS region transcription start site region 113554
Tssr113555 12 59072271 to 59072284 13 + TSS region transcription start site region 113555
Tssr113556 12 59080988 to 59080993 5 + TSS region transcription start site region 113556
Gm5786 12 59081019 to 59081900 881 + pseudogene predicted pseudogene 5786
Rpl21-ps3 12 59094055 to 59094537 482 - pseudogene ribosomal protein L21, pseudogene 3
Tssr113557 12 59095571 to 59095633 62 + TSS region transcription start site region 113557
Tssr113558 12 59095653 to 59095658 5 + TSS region transcription start site region 113558
Mia2 12 59095800 to 59109130 13330 + protein coding gene MIA SH3 domain ER export factor 2
Tssr113559 12 59129734 to 59129755 21 + TSS region transcription start site region 113559
Tssr113560 12 59129757 to 59129818 61 + TSS region transcription start site region 113560
Tssr113561 12 59130016 to 59130028 12 + TSS region transcription start site region 113561
Cpgi4668 12 59130763 to 59131866 1103 CpG island CpG island 4668
Tssr113562 12 59130767 to 59130786 19 + TSS region transcription start site region 113562
Tssr113563 12 59130994 to 59131029 35 + TSS region transcription start site region 113563
Tssr116455 12 59131278 to 59131294 16 - TSS region transcription start site region 116455
Tssr113564 12 59131425 to 59131469 44 + TSS region transcription start site region 113564
Tssr113565 12 59131473 to 59131495 22 + TSS region transcription start site region 113565
Tssr113566 12 59133799 to 59133816 17 + TSS region transcription start site region 113566
Tssr113567 12 59133827 to 59133839 12 + TSS region transcription start site region 113567
Gm24233 12 59134072 to 59134193 121 + snoRNA gene predicted gene, 24233
Tssr113568 12 59140452 to 59140459 7 + TSS region transcription start site region 113568
Tssr113569 12 59153077 to 59153081 4 + TSS region transcription start site region 113569
Tssr113570 12 59158277 to 59158299 22 + TSS region transcription start site region 113570
Tssr113571 12 59188444 to 59188459 15 + TSS region transcription start site region 113571
Fbxo33 12 59200655 to 59219725 19070 - protein coding gene F-box protein 33
Cpgi4669 12 59218655 to 59220254 1599 CpG island CpG island 4669
Tssr116456 12 59219446 to 59219494 48 - TSS region transcription start site region 116456
Tssr116457 12 59219701 to 59219717 16 - TSS region transcription start site region 116457
Tssr116458 12 59219729 to 59219776 47 - TSS region transcription start site region 116458
Gm27284 12 59237107 to 59237176 69 - miRNA gene predicted gene, 27284
Gm48258 12 59262673 to 59262984 311 + pseudogene predicted gene, 48258
Gm7719 12 59291964 to 59292938 974 + pseudogene predicted gene 7719
Gm4930 12 59317083 to 59318169 1086 - pseudogene predicted gene 4930
D12Mit173 12 59324964 to 59325085 121 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 173
Gm48263 12 59336828 to 59337011 183 + pseudogene predicted gene, 48263
Gm18242 12 59350976 to 59351517 541 - pseudogene predicted gene, 18242
Gm48268 12 59354819 to 59355609 790 - pseudogene predicted gene, 48268
Cpgi4670 12 59477796 to 59478026 230 CpG island CpG island 4670
D12Mit89 12 59523058 to 59523182 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 89
Gm7727 12 59645496 to 59646166 670 - pseudogene predicted gene 7727
Gm40430 12 59659997 to 59684204 24207 + lncRNA gene predicted gene, 40430
Gm24377 12 59665654 to 59665784 130 - snoRNA gene predicted gene, 24377
Gm22673 12 59672990 to 59673120 130 + snoRNA gene predicted gene, 22673
Gm48285 12 59718310 to 59720329 2019 - unclassified gene predicted gene, 48285
D12Mit190 12 59728466 to 59728592 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 190
D12Dcr3 12 59814480 to 59814575 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 3
Gm29809 12 59976733 to 59977225 492 - pseudogene predicted gene, 29809
Gm48289 12 60155975 to 60156286 311 + pseudogene predicted gene, 48289
Gm40431 12 60187624 to 60223499 35875 + lncRNA gene predicted gene, 40431
Gm32936 12 60317888 to 60318064 176 + protein coding gene predicted gene, 32936
Gm18871 12 60324209 to 60324886 677 - pseudogene predicted gene, 18871
Gm20049 12 60423407 to 60424136 729 - pseudogene predicted gene, 20049
Gm7739 12 60526518 to 60528077 1559 + pseudogene predicted gene 7739
Gm6068 12 60547743 to 60548238 495 - pseudogene predicted gene 6068
D12Mit36 12 60655249 to 60655367 118 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 36
Tssr113572 12 60721758 to 60721762 4 + TSS region transcription start site region 113572
Gm23059 12 60735498 to 60735604 106 + snRNA gene predicted gene, 23059
Gm38172 12 60866592 to 60877295 10703 + unclassified gene predicted gene, 38172
Gm48301 12 61195126 to 61234643 39517 + lincRNA gene predicted gene, 48301
Gm48304 12 61256638 to 61256965 327 + pseudogene predicted gene, 48304
Gm48305 12 61263831 to 61264413 582 + pseudogene predicted gene, 48305
Gm7745 12 61353498 to 61354692 1194 - pseudogene predicted gene 7745
Gm45964 12 61361724 to 61398478 36754 - lncRNA gene predicted gene, 45964
Nanog-ps2 12 61458510 to 61459038 528 + pseudogene Nanog pseudogene 2
Gm20063 12 61499660 to 61521820 22160 - lincRNA gene predicted gene, 20063
Cpgi4671 12 61521610 to 61521887 277 CpG island CpG island 4671
Tssr116459 12 61521805 to 61521818 13 - TSS region transcription start site region 116459
Lrfn5 12 61522814 to 61857928 335114 + protein coding gene leucine rich repeat and fibronectin type III domain containing 5
Cpgi4672 12 61522845 to 61523563 718 CpG island CpG island 4672
Tssr113573 12 61523112 to 61523184 72 + TSS region transcription start site region 113573
Tssr113574 12 61523860 to 61523880 20 + TSS region transcription start site region 113574
Tssr113575 12 61523889 to 61523922 33 + TSS region transcription start site region 113575
Cpgi4673 12 61524341 to 61524788 447 CpG island CpG island 4673
Tssr113576 12 61524536 to 61524554 18 + TSS region transcription start site region 113576
Tssr113577 12 61524600 to 61524640 40 + TSS region transcription start site region 113577
Tssr113578 12 61528678 to 61528683 5 + TSS region transcription start site region 113578
Tssr113579 12 61534223 to 61534226 3 + TSS region transcription start site region 113579
Tssr113580 12 61571441 to 61571444 3 + TSS region transcription start site region 113580
Gm30738 12 61579674 to 61580175 501 + pseudogene predicted gene, 30738
Tssr113581 12 61586187 to 61586204 17 + TSS region transcription start site region 113581
Tssr113582 12 61603880 to 61603883 3 + TSS region transcription start site region 113582
Tssr113583 12 61610460 to 61610471 11 + TSS region transcription start site region 113583
Tssr113584 12 61631735 to 61631741 6 + TSS region transcription start site region 113584
Tssr113585 12 61698960 to 61698964 4 + TSS region transcription start site region 113585
Tssr113586 12 61716542 to 61716544 2 + TSS region transcription start site region 113586
Gm48328 12 61752546 to 61754426 1880 + unclassified gene predicted gene, 48328
Gm23213 12 61867056 to 61867368 312 + unclassified non-coding RNA gene predicted gene, 23213
Gm7753 12 61888923 to 61890604 1681 - pseudogene predicted gene 7753
Gm24750 12 61920574 to 61920677 103 + snRNA gene predicted gene, 24750
Gm48358 12 61990302 to 61991769 1467 - unclassified gene predicted gene, 48358
Gm2754 12 62065037 to 62065571 534 - pseudogene predicted gene 2754
Gm48359 12 62065564 to 62065697 133 + pseudogene predicted gene, 48359
Tssr113587 12 62065954 to 62065957 3 + TSS region transcription start site region 113587
Tssr3849 12 62066052 to 62066055 3 + TSS region transcription start site region 3849