Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:57618089-60303011

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq8 12 54860868 to 57823799 2962931 QTL open field activity QTL 8
Ttc6 12 57564113 to 57737928 173815 + protein coding gene tetratricopeptide repeat domain 6
4921518K17Rik 12 57585975 to 57618602 32627 - antisense lncRNA gene RIKEN cDNA 4921518K17 gene
Rpl26-ps2 12 57632581 to 57633015 434 - pseudogene ribosomal protein L26, pseudogene 2
BC042761 12 57661458 to 57662911 1453 - antisense lncRNA gene cDNA sequence BC042761
Gm47617 12 57698601 to 57699062 461 - pseudogene predicted gene, 47617
Cpgi4658 12 57950718 to 57950874 156 CpG island CpG island 4658
Tssr113531 12 57951206 to 57951213 7 + TSS region transcription start site region 113531
Gm46329 12 57951217 to 58077394 126177 + lincRNA gene predicted gene, 46329
Tssr113532 12 57951218 to 57951225 7 + TSS region transcription start site region 113532
Tssr113533 12 58002744 to 58002767 23 + TSS region transcription start site region 113533
Cpgi4659 12 58211598 to 58211789 191 CpG island CpG island 4659
Sstr1 12 58211772 to 58214444 2672 + protein coding gene somatostatin receptor 1
Cpgi4660 12 58212168 to 58213914 1746 CpG island CpG island 4660
Tssr113534 12 58212270 to 58212286 16 + TSS region transcription start site region 113534
Tssr113535 12 58212291 to 58212309 18 + TSS region transcription start site region 113535
Tssr113536 12 58212426 to 58212443 17 + TSS region transcription start site region 113536
Clec14a 12 58264720 to 58269258 4538 - protein coding gene C-type lectin domain family 14, member a
Cpgi4661 12 58268186 to 58268925 739 CpG island CpG island 4661
Tssr116434 12 58268603 to 58268633 30 - TSS region transcription start site region 116434
Tssr3848 12 58268835 to 58268838 3 - TSS region transcription start site region 3848
Tssr116435 12 58268840 to 58268906 66 - TSS region transcription start site region 116435
Tssr116436 12 58268930 to 58268943 13 - TSS region transcription start site region 116436
Tssr116437 12 58269054 to 58269057 3 - TSS region transcription start site region 116437
Tssr116438 12 58269162 to 58269187 25 - TSS region transcription start site region 116438
Tssr113537 12 58413265 to 58413278 13 + TSS region transcription start site region 113537
Gm30687 12 58436930 to 58649035 212105 + lncRNA gene predicted gene, 30687
Tssr113538 12 58436962 to 58436973 11 + TSS region transcription start site region 113538
Gm40428 12 58442001 to 58451660 9659 + lncRNA gene predicted gene, 40428
D12Ertd125e 12 58504764 to 58504983 219 DNA segment DNA segment, Chr 12, ERATO Doi 125, expressed
Gm40427 12 58507922 to 58518257 10335 - lncRNA gene predicted gene, 40427
Cpgi4662 12 58586158 to 58586431 273 CpG island CpG island 4662
D12Mit247 12 58672320 to 58672440 120 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 247
D12Mit247.2 12 58672466 to 58672597 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 247.2
Gm18873 12 58763764 to 58764709 945 + pseudogene predicted gene, 18873
Tssr113539 12 58813882 to 58813901 19 + TSS region transcription start site region 113539
Gm47645 12 58813883 to 58815197 1314 + lincRNA gene predicted gene, 47645
Tssr113540 12 58813906 to 58813912 6 + TSS region transcription start site region 113540
Gm2649 12 58920667 to 58921276 609 + pseudogene predicted gene 2649
Gm47647 12 58923194 to 58924459 1265 - pseudogene predicted gene, 47647
D12Nds1 12 58946274 to 58946364 90 DNA segment DNA segment, Chr 12, Nuffield Department of Surgery 1
Tssr116439 12 58953014 to 58953017 3 - TSS region transcription start site region 116439
Gm17529 12 58953089 to 58968011 14922 + antisense lncRNA gene predicted gene, 17529
Sec23a 12 58958383 to 59012017 53634 - protein coding gene SEC23 homolog A, COPII coat complex component
Tssr116440 12 58976354 to 58976358 4 - TSS region transcription start site region 116440
Cpgi4663 12 59011442 to 59012314 872 CpG island CpG island 4663
Tssr116441 12 59011877 to 59011950 73 - TSS region transcription start site region 116441
Tssr116442 12 59011975 to 59011992 17 - TSS region transcription start site region 116442
Tssr116443 12 59011996 to 59012034 38 - TSS region transcription start site region 116443
Tssr116444 12 59012096 to 59012103 7 - TSS region transcription start site region 116444
Cpgi4664 12 59013297 to 59013759 462 CpG island CpG island 4664
Tssr113541 12 59013379 to 59013398 19 + TSS region transcription start site region 113541
Gemin2 12 59013393 to 59028470 15077 + protein coding gene gem nuclear organelle associated protein 2
Tssr113542 12 59013411 to 59013462 51 + TSS region transcription start site region 113542
Cpgi4665 12 59040024 to 59040342 318 CpG island CpG island 4665
Gm22973 12 59040335 to 59040525 190 + snRNA gene predicted gene, 22973
Tssr116445 12 59040335 to 59040345 10 - TSS region transcription start site region 116445
Trappc6b 12 59043092 to 59061472 18380 - protein coding gene trafficking protein particle complex 6B
Tssr116446 12 59046121 to 59046128 7 - TSS region transcription start site region 116446
Tssr116447 12 59050800 to 59050804 4 - TSS region transcription start site region 116447
Tssr116448 12 59053852 to 59053867 15 - TSS region transcription start site region 116448
Cpgi4666 12 59060922 to 59061625 703 CpG island CpG island 4666
Tssr116449 12 59061403 to 59061412 9 - TSS region transcription start site region 116449
Tssr116450 12 59061425 to 59061477 52 - TSS region transcription start site region 116450
Tssr116451 12 59061480 to 59061483 3 - TSS region transcription start site region 116451
Cpgi4667 12 59066530 to 59067516 986 CpG island CpG island 4667
Tssr113543 12 59066873 to 59066882 9 + TSS region transcription start site region 113543
Tssr113544 12 59066896 to 59066907 11 + TSS region transcription start site region 113544
Tssr113545 12 59066908 to 59066931 23 + TSS region transcription start site region 113545
Pnn 12 59066919 to 59074017 7098 + protein coding gene pinin
Tssr113546 12 59066940 to 59067001 61 + TSS region transcription start site region 113546
Tssr116452 12 59070198 to 59070234 36 - TSS region transcription start site region 116452
Tssr113547 12 59070214 to 59070227 13 + TSS region transcription start site region 113547
Tssr113548 12 59070230 to 59070279 49 + TSS region transcription start site region 113548
Tssr116453 12 59070236 to 59070264 28 - TSS region transcription start site region 116453
Tssr113549 12 59070423 to 59070486 63 + TSS region transcription start site region 113549
Tssr113550 12 59071468 to 59071490 22 + TSS region transcription start site region 113550
Tssr113551 12 59071519 to 59071532 13 + TSS region transcription start site region 113551
Tssr113552 12 59071553 to 59071570 17 + TSS region transcription start site region 113552
Tssr113553 12 59071588 to 59071603 15 + TSS region transcription start site region 113553
Tssr116454 12 59071620 to 59071672 52 - TSS region transcription start site region 116454
Tssr113554 12 59071806 to 59071830 24 + TSS region transcription start site region 113554
Tssr113555 12 59072271 to 59072284 13 + TSS region transcription start site region 113555
Tssr113556 12 59080988 to 59080993 5 + TSS region transcription start site region 113556
Gm5786 12 59081019 to 59081900 881 + pseudogene predicted pseudogene 5786
Rpl21-ps3 12 59094055 to 59094537 482 - pseudogene ribosomal protein L21, pseudogene 3
Tssr113557 12 59095571 to 59095633 62 + TSS region transcription start site region 113557
Tssr113558 12 59095653 to 59095658 5 + TSS region transcription start site region 113558
Mia2 12 59095800 to 59109130 13330 + protein coding gene MIA SH3 domain ER export factor 2
Tssr113559 12 59129734 to 59129755 21 + TSS region transcription start site region 113559
Tssr113560 12 59129757 to 59129818 61 + TSS region transcription start site region 113560
Tssr113561 12 59130016 to 59130028 12 + TSS region transcription start site region 113561
Cpgi4668 12 59130763 to 59131866 1103 CpG island CpG island 4668
Tssr113562 12 59130767 to 59130786 19 + TSS region transcription start site region 113562
Tssr113563 12 59130994 to 59131029 35 + TSS region transcription start site region 113563
Tssr116455 12 59131278 to 59131294 16 - TSS region transcription start site region 116455
Tssr113564 12 59131425 to 59131469 44 + TSS region transcription start site region 113564
Tssr113565 12 59131473 to 59131495 22 + TSS region transcription start site region 113565
Tssr113566 12 59133799 to 59133816 17 + TSS region transcription start site region 113566
Tssr113567 12 59133827 to 59133839 12 + TSS region transcription start site region 113567
Gm24233 12 59134072 to 59134193 121 + snoRNA gene predicted gene, 24233
Tssr113568 12 59140452 to 59140459 7 + TSS region transcription start site region 113568
Tssr113569 12 59153077 to 59153081 4 + TSS region transcription start site region 113569
Tssr113570 12 59158277 to 59158299 22 + TSS region transcription start site region 113570
Tssr113571 12 59188444 to 59188459 15 + TSS region transcription start site region 113571
Fbxo33 12 59200655 to 59219725 19070 - protein coding gene F-box protein 33
Cpgi4669 12 59218655 to 59220254 1599 CpG island CpG island 4669
Tssr116456 12 59219446 to 59219494 48 - TSS region transcription start site region 116456
Tssr116457 12 59219701 to 59219717 16 - TSS region transcription start site region 116457
Tssr116458 12 59219729 to 59219776 47 - TSS region transcription start site region 116458
Gm27284 12 59237107 to 59237176 69 - miRNA gene predicted gene, 27284
Gm48258 12 59262673 to 59262984 311 + pseudogene predicted gene, 48258
Gm7719 12 59291964 to 59292938 974 + pseudogene predicted gene 7719
Gm4930 12 59317083 to 59318169 1086 - pseudogene predicted gene 4930
D12Mit173 12 59324964 to 59325085 121 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 173
Gm48263 12 59336828 to 59337011 183 + pseudogene predicted gene, 48263
Gm18242 12 59350976 to 59351517 541 - pseudogene predicted gene, 18242
Gm48268 12 59354819 to 59355609 790 - pseudogene predicted gene, 48268
Cpgi4670 12 59477796 to 59478026 230 CpG island CpG island 4670
D12Mit89 12 59523058 to 59523182 124 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 89
Gm7727 12 59645496 to 59646166 670 - pseudogene predicted gene 7727
Gm40430 12 59659997 to 59684204 24207 + lncRNA gene predicted gene, 40430
Gm24377 12 59665654 to 59665784 130 - snoRNA gene predicted gene, 24377
Gm22673 12 59672990 to 59673120 130 + snoRNA gene predicted gene, 22673
Gm48285 12 59718310 to 59720329 2019 - unclassified gene predicted gene, 48285
D12Mit190 12 59728466 to 59728592 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 190
D12Dcr3 12 59814480 to 59814575 95 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 3
Gm29809 12 59976733 to 59977225 492 - pseudogene predicted gene, 29809
Gm48289 12 60155975 to 60156286 311 + pseudogene predicted gene, 48289
Gm40431 12 60187624 to 60223499 35875 + lncRNA gene predicted gene, 40431