Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:57439720-59094258

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq8 12 54860868 to 57823799 2962931 QTL open field activity QTL 8
Mipol1 12 57230425 to 57457241 226816 + protein coding gene mirror-image polydactyly 1
Gm16246 12 57441190 to 57450120 8930 - antisense lncRNA gene predicted gene 16246
Tssr113523 12 57475442 to 57475446 4 + TSS region transcription start site region 113523
Tssr113524 12 57501213 to 57501221 8 + TSS region transcription start site region 113524
Tssr113525 12 57501245 to 57501252 7 + TSS region transcription start site region 113525
Gm20016 12 57508746 to 57514975 6229 + lncRNA gene predicted gene, 20016
Tssr113526 12 57513028 to 57513041 13 + TSS region transcription start site region 113526
Tssr113527 12 57513178 to 57513188 10 + TSS region transcription start site region 113527
Gm2568 12 57519043 to 57520624 1581 - pseudogene predicted gene 2568
Gm37291 12 57525726 to 57530254 4528 + unclassified gene predicted gene, 37291
Cpgi4650 12 57534892 to 57535161 269 CpG island CpG island 4650
Cpgi4651 12 57535339 to 57535523 184 CpG island CpG island 4651
Cpgi4652 12 57538463 to 57539377 914 CpG island CpG island 4652
Foxa1 12 57540628 to 57546916 6288 - protein coding gene forkhead box A1
Cpgi4653 12 57542088 to 57543956 1868 CpG island CpG island 4653
Tssr116423 12 57542267 to 57542277 10 - TSS region transcription start site region 116423
Tssr116424 12 57542340 to 57542350 10 - TSS region transcription start site region 116424
Tssr116425 12 57543350 to 57543362 12 - TSS region transcription start site region 116425
Tssr116426 12 57544109 to 57544126 17 - TSS region transcription start site region 116426
Cpgi4654 12 57545119 to 57546915 1796 CpG island CpG island 4654
Tssr116427 12 57545987 to 57546016 29 - TSS region transcription start site region 116427
Tssr116428 12 57546127 to 57546141 14 - TSS region transcription start site region 116428
Tssr116429 12 57546149 to 57546158 9 - TSS region transcription start site region 116429
Tssr116430 12 57546465 to 57546504 39 - TSS region transcription start site region 116430
Tssr116431 12 57546693 to 57546706 13 - TSS region transcription start site region 116431
Tssr116432 12 57546781 to 57546793 12 - TSS region transcription start site region 116432
Tssr116433 12 57546877 to 57546923 46 - TSS region transcription start site region 116433
Cpgi4655 12 57548528 to 57548795 267 CpG island CpG island 4655
Cpgi4656 12 57550081 to 57550611 530 CpG island CpG island 4656
Tssr113528 12 57564097 to 57564105 8 + TSS region transcription start site region 113528
Tssr113529 12 57564111 to 57564150 39 + TSS region transcription start site region 113529
Ttc6 12 57564113 to 57737928 173815 + protein coding gene tetratricopeptide repeat domain 6
Gm30518 12 57571258 to 57575851 4593 - lncRNA gene predicted gene, 30518
Cpgi4657 12 57575832 to 57576874 1042 CpG island CpG island 4657
Tssr113530 12 57576140 to 57576166 26 + TSS region transcription start site region 113530
4921518K17Rik 12 57585975 to 57618602 32627 - antisense lncRNA gene RIKEN cDNA 4921518K17 gene
Rpl26-ps2 12 57632581 to 57633015 434 - pseudogene ribosomal protein L26, pseudogene 2
BC042761 12 57661458 to 57662911 1453 - antisense lncRNA gene cDNA sequence BC042761
Gm47617 12 57698601 to 57699062 461 - pseudogene predicted gene, 47617
Cpgi4658 12 57950718 to 57950874 156 CpG island CpG island 4658
Tssr113531 12 57951206 to 57951213 7 + TSS region transcription start site region 113531
Gm46329 12 57951217 to 58077394 126177 + lincRNA gene predicted gene, 46329
Tssr113532 12 57951218 to 57951225 7 + TSS region transcription start site region 113532
Tssr113533 12 58002744 to 58002767 23 + TSS region transcription start site region 113533
Cpgi4659 12 58211598 to 58211789 191 CpG island CpG island 4659
Sstr1 12 58211772 to 58214444 2672 + protein coding gene somatostatin receptor 1
Cpgi4660 12 58212168 to 58213914 1746 CpG island CpG island 4660
Tssr113534 12 58212270 to 58212286 16 + TSS region transcription start site region 113534
Tssr113535 12 58212291 to 58212309 18 + TSS region transcription start site region 113535
Tssr113536 12 58212426 to 58212443 17 + TSS region transcription start site region 113536
Clec14a 12 58264720 to 58269258 4538 - protein coding gene C-type lectin domain family 14, member a
Cpgi4661 12 58268186 to 58268925 739 CpG island CpG island 4661
Tssr116434 12 58268603 to 58268633 30 - TSS region transcription start site region 116434
Tssr3848 12 58268835 to 58268838 3 - TSS region transcription start site region 3848
Tssr116435 12 58268840 to 58268906 66 - TSS region transcription start site region 116435
Tssr116436 12 58268930 to 58268943 13 - TSS region transcription start site region 116436
Tssr116437 12 58269054 to 58269057 3 - TSS region transcription start site region 116437
Tssr116438 12 58269162 to 58269187 25 - TSS region transcription start site region 116438
Tssr113537 12 58413265 to 58413278 13 + TSS region transcription start site region 113537
Gm30687 12 58436930 to 58649035 212105 + lncRNA gene predicted gene, 30687
Tssr113538 12 58436962 to 58436973 11 + TSS region transcription start site region 113538
Gm40428 12 58442001 to 58451660 9659 + lncRNA gene predicted gene, 40428
D12Ertd125e 12 58504764 to 58504983 219 DNA segment DNA segment, Chr 12, ERATO Doi 125, expressed
Gm40427 12 58507922 to 58518257 10335 - lncRNA gene predicted gene, 40427
Cpgi4662 12 58586158 to 58586431 273 CpG island CpG island 4662
D12Mit247 12 58672320 to 58672440 120 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 247
D12Mit247.2 12 58672466 to 58672597 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 247.2
Gm18873 12 58763764 to 58764709 945 + pseudogene predicted gene, 18873
Tssr113539 12 58813882 to 58813901 19 + TSS region transcription start site region 113539
Gm47645 12 58813883 to 58815197 1314 + lincRNA gene predicted gene, 47645
Tssr113540 12 58813906 to 58813912 6 + TSS region transcription start site region 113540
Gm2649 12 58920667 to 58921276 609 + pseudogene predicted gene 2649
Gm47647 12 58923194 to 58924459 1265 - pseudogene predicted gene, 47647
D12Nds1 12 58946274 to 58946364 90 DNA segment DNA segment, Chr 12, Nuffield Department of Surgery 1
Tssr116439 12 58953014 to 58953017 3 - TSS region transcription start site region 116439
Gm17529 12 58953089 to 58968011 14922 + antisense lncRNA gene predicted gene, 17529
Sec23a 12 58958383 to 59012017 53634 - protein coding gene SEC23 homolog A, COPII coat complex component
Tssr116440 12 58976354 to 58976358 4 - TSS region transcription start site region 116440
Cpgi4663 12 59011442 to 59012314 872 CpG island CpG island 4663
Tssr116441 12 59011877 to 59011950 73 - TSS region transcription start site region 116441
Tssr116442 12 59011975 to 59011992 17 - TSS region transcription start site region 116442
Tssr116443 12 59011996 to 59012034 38 - TSS region transcription start site region 116443
Tssr116444 12 59012096 to 59012103 7 - TSS region transcription start site region 116444
Cpgi4664 12 59013297 to 59013759 462 CpG island CpG island 4664
Tssr113541 12 59013379 to 59013398 19 + TSS region transcription start site region 113541
Gemin2 12 59013393 to 59028470 15077 + protein coding gene gem nuclear organelle associated protein 2
Tssr113542 12 59013411 to 59013462 51 + TSS region transcription start site region 113542
Cpgi4665 12 59040024 to 59040342 318 CpG island CpG island 4665
Tssr116445 12 59040335 to 59040345 10 - TSS region transcription start site region 116445
Gm22973 12 59040335 to 59040525 190 + snRNA gene predicted gene, 22973
Trappc6b 12 59043092 to 59061472 18380 - protein coding gene trafficking protein particle complex 6B
Tssr116446 12 59046121 to 59046128 7 - TSS region transcription start site region 116446
Tssr116447 12 59050800 to 59050804 4 - TSS region transcription start site region 116447
Tssr116448 12 59053852 to 59053867 15 - TSS region transcription start site region 116448
Cpgi4666 12 59060922 to 59061625 703 CpG island CpG island 4666
Tssr116449 12 59061403 to 59061412 9 - TSS region transcription start site region 116449
Tssr116450 12 59061425 to 59061477 52 - TSS region transcription start site region 116450
Tssr116451 12 59061480 to 59061483 3 - TSS region transcription start site region 116451
Cpgi4667 12 59066530 to 59067516 986 CpG island CpG island 4667
Tssr113543 12 59066873 to 59066882 9 + TSS region transcription start site region 113543
Tssr113544 12 59066896 to 59066907 11 + TSS region transcription start site region 113544
Tssr113545 12 59066908 to 59066931 23 + TSS region transcription start site region 113545
Pnn 12 59066919 to 59074017 7098 + protein coding gene pinin
Tssr113546 12 59066940 to 59067001 61 + TSS region transcription start site region 113546
Tssr116452 12 59070198 to 59070234 36 - TSS region transcription start site region 116452
Tssr113547 12 59070214 to 59070227 13 + TSS region transcription start site region 113547
Tssr113548 12 59070230 to 59070279 49 + TSS region transcription start site region 113548
Tssr116453 12 59070236 to 59070264 28 - TSS region transcription start site region 116453
Tssr113549 12 59070423 to 59070486 63 + TSS region transcription start site region 113549
Tssr113550 12 59071468 to 59071490 22 + TSS region transcription start site region 113550
Tssr113551 12 59071519 to 59071532 13 + TSS region transcription start site region 113551
Tssr113552 12 59071553 to 59071570 17 + TSS region transcription start site region 113552
Tssr113553 12 59071588 to 59071603 15 + TSS region transcription start site region 113553
Tssr116454 12 59071620 to 59071672 52 - TSS region transcription start site region 116454
Tssr113554 12 59071806 to 59071830 24 + TSS region transcription start site region 113554
Tssr113555 12 59072271 to 59072284 13 + TSS region transcription start site region 113555
Tssr113556 12 59080988 to 59080993 5 + TSS region transcription start site region 113556
Gm5786 12 59081019 to 59081900 881 + pseudogene predicted pseudogene 5786
Rpl21-ps3 12 59094055 to 59094537 482 - pseudogene ribosomal protein L21, pseudogene 3