Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:56852262-57542275

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq11 12 53108841 to 57229970 4121129 QTL open field activity QTL 11
Slc25a21 12 56712634 to 57197472 484838 - protein coding gene solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21
Gm30001 12 56897006 to 56907982 10976 + lncRNA gene predicted gene, 30001
Tssr116411 12 56978700 to 56978703 3 - TSS region transcription start site region 116411
Tssr116412 12 57007824 to 57007825 1 - TSS region transcription start site region 116412
Tssr116413 12 57104503 to 57104510 7 - TSS region transcription start site region 116413
Tssr116414 12 57117631 to 57117634 3 - TSS region transcription start site region 116414
Tssr116415 12 57151128 to 57151132 4 - TSS region transcription start site region 116415
Tssr116416 12 57176088 to 57176091 3 - TSS region transcription start site region 116416
Tssr116417 12 57181453 to 57181461 8 - TSS region transcription start site region 116417
Cpgi4647 12 57196598 to 57197404 806 CpG island CpG island 4647
Tssr116418 12 57197166 to 57197192 26 - TSS region transcription start site region 116418
Tssr116419 12 57197195 to 57197260 65 - TSS region transcription start site region 116419
Tssr116420 12 57197262 to 57197275 13 - TSS region transcription start site region 116420
Tssr116421 12 57197291 to 57197305 14 - TSS region transcription start site region 116421
Tssr116422 12 57197311 to 57197330 19 - TSS region transcription start site region 116422
Cpgi4648 12 57211618 to 57212158 540 CpG island CpG island 4648
Gm40426 12 57226684 to 57227643 959 + lncRNA gene predicted gene, 40426
Tssr113518 12 57227875 to 57227882 7 + TSS region transcription start site region 113518
Cpgi4649 12 57230049 to 57230950 901 CpG island CpG island 4649
Tssr113519 12 57230406 to 57230460 54 + TSS region transcription start site region 113519
Prps1l3 12 57230412 to 57239882 9470 + protein coding gene phosphoribosyl pyrophosphate synthetase 1-like 3
Mipol1 12 57230425 to 57457241 226816 + protein coding gene mirror-image polydactyly 1
Tssr113520 12 57230465 to 57230503 38 + TSS region transcription start site region 113520
Tssr113521 12 57230514 to 57230564 50 + TSS region transcription start site region 113521
Gm11025 12 57272847 to 57273312 465 - pseudogene predicted gene 11025
Tssr113522 12 57414150 to 57414166 16 + TSS region transcription start site region 113522
Gm16246 12 57441190 to 57450120 8930 - antisense lncRNA gene predicted gene 16246
Tssr113523 12 57475442 to 57475446 4 + TSS region transcription start site region 113523
Tssr113524 12 57501213 to 57501221 8 + TSS region transcription start site region 113524
Tssr113525 12 57501245 to 57501252 7 + TSS region transcription start site region 113525
Gm20016 12 57508746 to 57514975 6229 + lncRNA gene predicted gene, 20016
Tssr113526 12 57513028 to 57513041 13 + TSS region transcription start site region 113526
Tssr113527 12 57513178 to 57513188 10 + TSS region transcription start site region 113527
Gm2568 12 57519043 to 57520624 1581 - pseudogene predicted gene 2568
Gm37291 12 57525726 to 57530254 4528 + unclassified gene predicted gene, 37291
Cpgi4650 12 57534892 to 57535161 269 CpG island CpG island 4650
Cpgi4651 12 57535339 to 57535523 184 CpG island CpG island 4651
Cpgi4652 12 57538463 to 57539377 914 CpG island CpG island 4652
Foxa1 12 57540628 to 57546916 6288 - protein coding gene forkhead box A1
Cpgi4653 12 57542088 to 57543956 1868 CpG island CpG island 4653
Tssr116423 12 57542267 to 57542277 10 - TSS region transcription start site region 116423