Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:56571128-57731132

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq11 12 53108841 to 57229970 4121129 QTL open field activity QTL 11
Gm26973 12 56535343 to 56607476 72133 + antisense lncRNA gene predicted gene, 26973
C87198 12 56591059 to 56594554 3495 + lincRNA gene expressed sequence C87198
Gm38103 12 56609613 to 56610476 863 - unclassified gene predicted gene, 38103
Nkx2-9 12 56611389 to 56613284 1895 - protein coding gene NK2 homeobox 9
Cpgi4639 12 56611581 to 56612443 862 CpG island CpG island 4639
Cpgi4640 12 56612770 to 56613321 551 CpG island CpG island 4640
Tssr116406 12 56613173 to 56613181 8 - TSS region transcription start site region 116406
Tssr116407 12 56613233 to 56613247 14 - TSS region transcription start site region 116407
Tssr116408 12 56613270 to 56613291 21 - TSS region transcription start site region 116408
Tssr116409 12 56613301 to 56613318 17 - TSS region transcription start site region 116409
Gm48835 12 56628984 to 56630262 1278 + unclassified gene predicted gene, 48835
D12Mit191 12 56642941 to 56643077 136 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 191
Gm18339 12 56666971 to 56667858 887 + pseudogene predicted gene, 18339
Cpgi4641 12 56681094 to 56681733 639 CpG island CpG island 4641
Cpgi4642 12 56689679 to 56690429 750 CpG island CpG island 4642
Gm15524 12 56689918 to 56692964 3046 - antisense lncRNA gene predicted gene 15524
Cpgi4643 12 56691270 to 56691978 708 CpG island CpG island 4643
Tssr113516 12 56691511 to 56691528 17 + TSS region transcription start site region 113516
Pax9 12 56691767 to 56712822 21055 + protein coding gene paired box 9
Cpgi4644 12 56692421 to 56692755 334 CpG island CpG island 4644
Tssr116410 12 56692913 to 56692921 8 - TSS region transcription start site region 116410
Tssr113517 12 56695628 to 56695700 72 + TSS region transcription start site region 113517
Cpgi4645 12 56695742 to 56697652 1910 CpG island CpG island 4645
Cpgi4646 12 56700071 to 56700604 533 CpG island CpG island 4646
Gm46352 12 56703827 to 56705869 2042 - lncRNA gene predicted gene, 46352
Slc25a21 12 56712634 to 57197472 484838 - protein coding gene solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21
Gm30001 12 56897006 to 56907982 10976 + lncRNA gene predicted gene, 30001
Tssr116411 12 56978700 to 56978703 3 - TSS region transcription start site region 116411
Tssr116412 12 57007824 to 57007825 1 - TSS region transcription start site region 116412
Tssr116413 12 57104503 to 57104510 7 - TSS region transcription start site region 116413
Tssr116414 12 57117631 to 57117634 3 - TSS region transcription start site region 116414
Tssr116415 12 57151128 to 57151132 4 - TSS region transcription start site region 116415
Tssr116416 12 57176088 to 57176091 3 - TSS region transcription start site region 116416
Tssr116417 12 57181453 to 57181461 8 - TSS region transcription start site region 116417
Cpgi4647 12 57196598 to 57197404 806 CpG island CpG island 4647
Tssr116418 12 57197166 to 57197192 26 - TSS region transcription start site region 116418
Tssr116419 12 57197195 to 57197260 65 - TSS region transcription start site region 116419
Tssr116420 12 57197262 to 57197275 13 - TSS region transcription start site region 116420
Tssr116421 12 57197291 to 57197305 14 - TSS region transcription start site region 116421
Tssr116422 12 57197311 to 57197330 19 - TSS region transcription start site region 116422
Cpgi4648 12 57211618 to 57212158 540 CpG island CpG island 4648
Gm40426 12 57226684 to 57227643 959 + lncRNA gene predicted gene, 40426
Tssr113518 12 57227875 to 57227882 7 + TSS region transcription start site region 113518
Cpgi4649 12 57230049 to 57230950 901 CpG island CpG island 4649
Tssr113519 12 57230406 to 57230460 54 + TSS region transcription start site region 113519
Prps1l3 12 57230412 to 57239882 9470 + protein coding gene phosphoribosyl pyrophosphate synthetase 1-like 3
Mipol1 12 57230425 to 57457241 226816 + protein coding gene mirror-image polydactyly 1
Tssr113520 12 57230465 to 57230503 38 + TSS region transcription start site region 113520
Tssr113521 12 57230514 to 57230564 50 + TSS region transcription start site region 113521
Gm11025 12 57272847 to 57273312 465 - pseudogene predicted gene 11025
Tssr113522 12 57414150 to 57414166 16 + TSS region transcription start site region 113522
Gm16246 12 57441190 to 57450120 8930 - antisense lncRNA gene predicted gene 16246
Tssr113523 12 57475442 to 57475446 4 + TSS region transcription start site region 113523
Tssr113524 12 57501213 to 57501221 8 + TSS region transcription start site region 113524
Tssr113525 12 57501245 to 57501252 7 + TSS region transcription start site region 113525
Gm20016 12 57508746 to 57514975 6229 + lncRNA gene predicted gene, 20016
Tssr113526 12 57513028 to 57513041 13 + TSS region transcription start site region 113526
Tssr113527 12 57513178 to 57513188 10 + TSS region transcription start site region 113527
Gm2568 12 57519043 to 57520624 1581 - pseudogene predicted gene 2568
Gm37291 12 57525726 to 57530254 4528 + unclassified gene predicted gene, 37291
Cpgi4650 12 57534892 to 57535161 269 CpG island CpG island 4650
Cpgi4651 12 57535339 to 57535523 184 CpG island CpG island 4651
Cpgi4652 12 57538463 to 57539377 914 CpG island CpG island 4652
Foxa1 12 57540628 to 57546916 6288 - protein coding gene forkhead box A1
Cpgi4653 12 57542088 to 57543956 1868 CpG island CpG island 4653
Tssr116423 12 57542267 to 57542277 10 - TSS region transcription start site region 116423
Tssr116424 12 57542340 to 57542350 10 - TSS region transcription start site region 116424
Tssr116425 12 57543350 to 57543362 12 - TSS region transcription start site region 116425
Tssr116426 12 57544109 to 57544126 17 - TSS region transcription start site region 116426
Cpgi4654 12 57545119 to 57546915 1796 CpG island CpG island 4654
Tssr116427 12 57545987 to 57546016 29 - TSS region transcription start site region 116427
Tssr116428 12 57546127 to 57546141 14 - TSS region transcription start site region 116428
Tssr116429 12 57546149 to 57546158 9 - TSS region transcription start site region 116429
Tssr116430 12 57546465 to 57546504 39 - TSS region transcription start site region 116430
Tssr116431 12 57546693 to 57546706 13 - TSS region transcription start site region 116431
Tssr116432 12 57546781 to 57546793 12 - TSS region transcription start site region 116432
Tssr116433 12 57546877 to 57546923 46 - TSS region transcription start site region 116433
Cpgi4655 12 57548528 to 57548795 267 CpG island CpG island 4655
Cpgi4656 12 57550081 to 57550611 530 CpG island CpG island 4656
Tssr113528 12 57564097 to 57564105 8 + TSS region transcription start site region 113528
Tssr113529 12 57564111 to 57564150 39 + TSS region transcription start site region 113529
Ttc6 12 57564113 to 57737928 173815 + protein coding gene tetratricopeptide repeat domain 6
Gm30518 12 57571258 to 57575851 4593 - lncRNA gene predicted gene, 30518
Cpgi4657 12 57575832 to 57576874 1042 CpG island CpG island 4657
Tssr113530 12 57576140 to 57576166 26 + TSS region transcription start site region 113530
4921518K17Rik 12 57585975 to 57618602 32627 - antisense lncRNA gene RIKEN cDNA 4921518K17 gene
Rpl26-ps2 12 57632581 to 57633015 434 - pseudogene ribosomal protein L26, pseudogene 2
BC042761 12 57661458 to 57662911 1453 - antisense lncRNA gene cDNA sequence BC042761
Gm47617 12 57698601 to 57699062 461 - pseudogene predicted gene, 47617