Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:56531059-56654554

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nkx2-1 12 56531958 to 56536908 4950 - protein coding gene NK2 homeobox 1
Tssr116384 12 56532900 to 56532912 12 - TSS region transcription start site region 116384
Cpgi4636 12 56532910 to 56535330 2420 CpG island CpG island 4636
Tssr116385 12 56532942 to 56532984 42 - TSS region transcription start site region 116385
Tssr116386 12 56532991 to 56533013 22 - TSS region transcription start site region 116386
Tssr116387 12 56533600 to 56533611 11 - TSS region transcription start site region 116387
Tssr116388 12 56535016 to 56535030 14 - TSS region transcription start site region 116388
Tssr116389 12 56535047 to 56535100 53 - TSS region transcription start site region 116389
Tssr116390 12 56535191 to 56535207 16 - TSS region transcription start site region 116390
Tssr116391 12 56535233 to 56535249 16 - TSS region transcription start site region 116391
Tssr116392 12 56535253 to 56535269 16 - TSS region transcription start site region 116392
Tssr113515 12 56535291 to 56535302 11 + TSS region transcription start site region 113515
Gm26973 12 56535343 to 56607476 72133 + antisense lncRNA gene predicted gene, 26973
Cpgi4637 12 56535584 to 56536894 1310 CpG island CpG island 4637
Tssr116393 12 56535924 to 56535937 13 - TSS region transcription start site region 116393
Tssr116394 12 56535949 to 56535966 17 - TSS region transcription start site region 116394
Tssr116395 12 56535972 to 56535989 17 - TSS region transcription start site region 116395
Tssr116396 12 56535998 to 56536023 25 - TSS region transcription start site region 116396
Tssr116397 12 56536071 to 56536095 24 - TSS region transcription start site region 116397
Tssr116398 12 56536099 to 56536122 23 - TSS region transcription start site region 116398
Tssr116399 12 56536608 to 56536621 13 - TSS region transcription start site region 116399
Tssr116400 12 56536662 to 56536678 16 - TSS region transcription start site region 116400
Tssr116401 12 56536713 to 56536730 17 - TSS region transcription start site region 116401
Tssr116402 12 56536745 to 56536790 45 - TSS region transcription start site region 116402
Tssr116403 12 56536798 to 56536810 12 - TSS region transcription start site region 116403
Tssr116404 12 56536895 to 56536937 42 - TSS region transcription start site region 116404
Cpgi4638 12 56537490 to 56537776 286 CpG island CpG island 4638
Tssr116405 12 56537526 to 56537557 31 - TSS region transcription start site region 116405
Gm25760 12 56551459 to 56551590 131 + snoRNA gene predicted gene, 25760
C87198 12 56591059 to 56594554 3495 + lincRNA gene expressed sequence C87198
Gm38103 12 56609613 to 56610476 863 - unclassified gene predicted gene, 38103
Nkx2-9 12 56611389 to 56613284 1895 - protein coding gene NK2 homeobox 9
Cpgi4639 12 56611581 to 56612443 862 CpG island CpG island 4639
Cpgi4640 12 56612770 to 56613321 551 CpG island CpG island 4640
Tssr116406 12 56613173 to 56613181 8 - TSS region transcription start site region 116406
Tssr116407 12 56613233 to 56613247 14 - TSS region transcription start site region 116407
Tssr116408 12 56613270 to 56613291 21 - TSS region transcription start site region 116408
Tssr116409 12 56613301 to 56613318 17 - TSS region transcription start site region 116409
Gm48835 12 56628984 to 56630262 1278 + unclassified gene predicted gene, 48835
D12Mit191 12 56642941 to 56643077 136 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 191