Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:56513301-56713318

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sfta3-ps 12 56490428 to 56529420 38992 - lncRNA gene surfactant associated 3, pseudogene
Tssr116372 12 56513936 to 56513968 32 - TSS region transcription start site region 116372
Cpgi4633 12 56519635 to 56520191 556 CpG island CpG island 4633
Cpgi4634 12 56520916 to 56521393 477 CpG island CpG island 4634
Tssr116373 12 56521340 to 56521351 11 - TSS region transcription start site region 116373
Tssr116374 12 56521388 to 56521397 9 - TSS region transcription start site region 116374
Tssr116375 12 56522185 to 56522198 13 - TSS region transcription start site region 116375
Tssr116376 12 56523254 to 56523266 12 - TSS region transcription start site region 116376
Cpgi4635 12 56528962 to 56529364 402 CpG island CpG island 4635
Tssr116377 12 56529377 to 56529386 9 - TSS region transcription start site region 116377
Tssr116378 12 56529396 to 56529397 1 - TSS region transcription start site region 116378
Tssr116379 12 56529410 to 56529437 27 - TSS region transcription start site region 116379
Tssr116380 12 56529446 to 56529451 5 - TSS region transcription start site region 116380
Tssr116381 12 56529456 to 56529463 7 - TSS region transcription start site region 116381
Tssr3847 12 56529491 to 56529498 7 - TSS region transcription start site region 3847
Tssr116382 12 56529500 to 56529511 11 - TSS region transcription start site region 116382
Tssr116383 12 56529548 to 56529558 10 - TSS region transcription start site region 116383
Nkx2-1 12 56531958 to 56536908 4950 - protein coding gene NK2 homeobox 1
Tssr116384 12 56532900 to 56532912 12 - TSS region transcription start site region 116384
Cpgi4636 12 56532910 to 56535330 2420 CpG island CpG island 4636
Tssr116385 12 56532942 to 56532984 42 - TSS region transcription start site region 116385
Tssr116386 12 56532991 to 56533013 22 - TSS region transcription start site region 116386
Tssr116387 12 56533600 to 56533611 11 - TSS region transcription start site region 116387
Tssr116388 12 56535016 to 56535030 14 - TSS region transcription start site region 116388
Tssr116389 12 56535047 to 56535100 53 - TSS region transcription start site region 116389
Tssr116390 12 56535191 to 56535207 16 - TSS region transcription start site region 116390
Tssr116391 12 56535233 to 56535249 16 - TSS region transcription start site region 116391
Tssr116392 12 56535253 to 56535269 16 - TSS region transcription start site region 116392
Tssr113515 12 56535291 to 56535302 11 + TSS region transcription start site region 113515
Gm26973 12 56535343 to 56607476 72133 + antisense lncRNA gene predicted gene, 26973
Cpgi4637 12 56535584 to 56536894 1310 CpG island CpG island 4637
Tssr116393 12 56535924 to 56535937 13 - TSS region transcription start site region 116393
Tssr116394 12 56535949 to 56535966 17 - TSS region transcription start site region 116394
Tssr116395 12 56535972 to 56535989 17 - TSS region transcription start site region 116395
Tssr116396 12 56535998 to 56536023 25 - TSS region transcription start site region 116396
Tssr116397 12 56536071 to 56536095 24 - TSS region transcription start site region 116397
Tssr116398 12 56536099 to 56536122 23 - TSS region transcription start site region 116398
Tssr116399 12 56536608 to 56536621 13 - TSS region transcription start site region 116399
Tssr116400 12 56536662 to 56536678 16 - TSS region transcription start site region 116400
Tssr116401 12 56536713 to 56536730 17 - TSS region transcription start site region 116401
Tssr116402 12 56536745 to 56536790 45 - TSS region transcription start site region 116402
Tssr116403 12 56536798 to 56536810 12 - TSS region transcription start site region 116403
Tssr116404 12 56536895 to 56536937 42 - TSS region transcription start site region 116404
Cpgi4638 12 56537490 to 56537776 286 CpG island CpG island 4638
Tssr116405 12 56537526 to 56537557 31 - TSS region transcription start site region 116405
Gm25760 12 56551459 to 56551590 131 + snoRNA gene predicted gene, 25760
C87198 12 56591059 to 56594554 3495 + lincRNA gene expressed sequence C87198
Gm38103 12 56609613 to 56610476 863 - unclassified gene predicted gene, 38103
Nkx2-9 12 56611389 to 56613284 1895 - protein coding gene NK2 homeobox 9
Cpgi4639 12 56611581 to 56612443 862 CpG island CpG island 4639
Cpgi4640 12 56612770 to 56613321 551 CpG island CpG island 4640
Tssr116406 12 56613173 to 56613181 8 - TSS region transcription start site region 116406
Tssr116407 12 56613233 to 56613247 14 - TSS region transcription start site region 116407
Tssr116408 12 56613270 to 56613291 21 - TSS region transcription start site region 116408
Tssr116409 12 56613301 to 56613318 17 - TSS region transcription start site region 116409
Gm48835 12 56628984 to 56630262 1278 + unclassified gene predicted gene, 48835
D12Mit191 12 56642941 to 56643077 136 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 191
Gm18339 12 56666971 to 56667858 887 + pseudogene predicted gene, 18339
Cpgi4641 12 56681094 to 56681733 639 CpG island CpG island 4641
Cpgi4642 12 56689679 to 56690429 750 CpG island CpG island 4642
Gm15524 12 56689918 to 56692964 3046 - antisense lncRNA gene predicted gene 15524
Cpgi4643 12 56691270 to 56691978 708 CpG island CpG island 4643
Tssr113516 12 56691511 to 56691528 17 + TSS region transcription start site region 113516
Pax9 12 56691767 to 56712822 21055 + protein coding gene paired box 9
Cpgi4644 12 56692421 to 56692755 334 CpG island CpG island 4644
Tssr116410 12 56692913 to 56692921 8 - TSS region transcription start site region 116410
Tssr113517 12 56695628 to 56695700 72 + TSS region transcription start site region 113517
Cpgi4645 12 56695742 to 56697652 1910 CpG island CpG island 4645
Cpgi4646 12 56700071 to 56700604 533 CpG island CpG island 4646
Gm46352 12 56703827 to 56705869 2042 - lncRNA gene predicted gene, 46352
Slc25a21 12 56712634 to 57197472 484838 - protein coding gene solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21