Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:55616636-56496755

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ralgapa1 12 55602896 to 55821167 218271 - protein coding gene Ral GTPase activating protein, alpha subunit 1
D12Mit246 12 55747618 to 55747718 100 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 246
Tssr116355 12 55783317 to 55783318 1 - TSS region transcription start site region 116355
Gm48655 12 55815184 to 55816527 1343 - unclassified gene predicted gene, 48655
Cpgi4623 12 55820216 to 55821373 1157 CpG island CpG island 4623
Gm9812 12 55820611 to 55821580 969 + pseudogene predicted gene 9812
Tssr116356 12 55821021 to 55821028 7 - TSS region transcription start site region 116356
Gm23394 12 55821063 to 55821153 90 - miRNA gene predicted gene, 23394
Tssr116357 12 55821073 to 55821084 11 - TSS region transcription start site region 116357
Tssr116358 12 55821098 to 55821110 12 - TSS region transcription start site region 116358
Tssr116359 12 55821137 to 55821149 12 - TSS region transcription start site region 116359
Tssr116360 12 55821157 to 55821195 38 - TSS region transcription start site region 116360
Tssr116361 12 55821196 to 55821207 11 - TSS region transcription start site region 116361
Cpgi4624 12 55836157 to 55837122 965 CpG island CpG island 4624
Tssr113505 12 55836317 to 55836330 13 + TSS region transcription start site region 113505
Brms1l 12 55836324 to 55869736 33412 + protein coding gene breast cancer metastasis-suppressor 1-like
Tssr113506 12 55836332 to 55836361 29 + TSS region transcription start site region 113506
Tssr113507 12 55836365 to 55836408 43 + TSS region transcription start site region 113507
Tssr113508 12 55847727 to 55847731 4 + TSS region transcription start site region 113508
Cpgi4625 12 55861011 to 55861221 210 CpG island CpG island 4625
Gm22296 12 55910821 to 55910923 102 - snRNA gene predicted gene, 22296
Cpgi4626 12 55916781 to 55917384 603 CpG island CpG island 4626
Tssr3846 12 55961506 to 55961511 5 - TSS region transcription start site region 3846
Gm5183 12 56050533 to 56051161 628 + pseudogene predicted gene 5183
Gm23799 12 56056636 to 56056755 119 - rRNA gene predicted gene, 23799
Cpgi4627 12 56058525 to 56058728 203 CpG island CpG island 4627
Gm5184 12 56189414 to 56191115 1701 + pseudogene predicted gene 5184
Gm36754 12 56235144 to 56239259 4115 - lncRNA gene predicted gene, 36754
Gm47682 12 56246648 to 56254398 7750 - lincRNA gene predicted gene, 47682
Gm25917 12 56252315 to 56252444 129 - snoRNA gene predicted gene, 25917
Tssr113509 12 56253147 to 56253162 15 + TSS region transcription start site region 113509
Tssr113510 12 56253188 to 56253212 24 + TSS region transcription start site region 113510
Tssr113511 12 56253228 to 56253248 20 + TSS region transcription start site region 113511
Gm19990 12 56253243 to 56266381 13138 + lincRNA gene predicted gene, 19990
Tssr113512 12 56253250 to 56253261 11 + TSS region transcription start site region 113512
Gm46351 12 56266003 to 56275945 9942 - lncRNA gene predicted gene, 46351
Gm24685 12 56266920 to 56267204 284 - unclassified non-coding RNA gene predicted gene, 24685
Cpgi4628 12 56275603 to 56275755 152 CpG island CpG island 4628
Tssr116362 12 56275703 to 56275729 26 - TSS region transcription start site region 116362
Tssr116363 12 56275734 to 56275766 32 - TSS region transcription start site region 116363
Cpgi4629 12 56286713 to 56287018 305 CpG island CpG island 4629
Tssr113513 12 56289166 to 56289174 8 + TSS region transcription start site region 113513
Tssr113514 12 56289227 to 56289234 7 + TSS region transcription start site region 113514
Cpgi4630 12 56301913 to 56302191 278 CpG island CpG island 4630
Mbip 12 56328306 to 56345895 17589 - protein coding gene MAP3K12 binding inhibitory protein 1
Cpgi4631 12 56345351 to 56345987 636 CpG island CpG island 4631
Tssr116364 12 56345772 to 56345788 16 - TSS region transcription start site region 116364
Tssr116365 12 56345792 to 56345842 50 - TSS region transcription start site region 116365
Tssr116366 12 56345862 to 56345888 26 - TSS region transcription start site region 116366
Cox6c2 12 56373593 to 56373823 230 - pseudogene cytochrome c oxidase subunit 6C2
Tssr116367 12 56373710 to 56373733 23 - TSS region transcription start site region 116367
Tssr116368 12 56373843 to 56373885 42 - TSS region transcription start site region 116368
Gm18027 12 56409939 to 56410557 618 - pseudogene predicted gene, 18027
Cpgi4632 12 56464293 to 56464575 282 CpG island CpG island 4632
Sfta3-ps 12 56490428 to 56529420 38992 - lncRNA gene surfactant associated 3, pseudogene