Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:55491781-56342384

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfkbia 12 55489410 to 55492647 3237 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha
Cpgi4619 12 55491563 to 55492861 1298 CpG island CpG island 4619
Tssr116353 12 55491781 to 55491801 20 - TSS region transcription start site region 116353
Tssr116354 12 55492587 to 55492605 18 - TSS region transcription start site region 116354
Tssr113500 12 55492698 to 55492727 29 + TSS region transcription start site region 113500
Gm36634 12 55497721 to 55499951 2230 + lncRNA gene predicted gene, 36634
Tssr113501 12 55507834 to 55507860 26 + TSS region transcription start site region 113501
Cpgi4620 12 55507841 to 55508000 159 CpG island CpG island 4620
Cpgi4621 12 55565154 to 55565682 528 CpG island CpG island 4621
Tssr113502 12 55565188 to 55565257 69 + TSS region transcription start site region 113502
Aldoart2 12 55565239 to 55566896 1657 + protein coding gene aldolase 1 A, retrogene 2
Tssr113503 12 55565261 to 55565267 6 + TSS region transcription start site region 113503
4921516I12Rik 12 55597218 to 55599412 2194 unclassified gene RIKEN cDNA 4921516I12 gene
Cpgi4622 12 55598698 to 55601256 2558 CpG island CpG island 4622
Tssr113504 12 55599424 to 55599429 5 + TSS region transcription start site region 113504
Insm2 12 55599427 to 55602086 2659 + protein coding gene insulinoma-associated 2
Ralgapa1 12 55602896 to 55821167 218271 - protein coding gene Ral GTPase activating protein, alpha subunit 1
D12Mit246 12 55747618 to 55747718 100 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 246
Tssr116355 12 55783317 to 55783318 1 - TSS region transcription start site region 116355
Gm48655 12 55815184 to 55816527 1343 - unclassified gene predicted gene, 48655
Cpgi4623 12 55820216 to 55821373 1157 CpG island CpG island 4623
Gm9812 12 55820611 to 55821580 969 + pseudogene predicted gene 9812
Tssr116356 12 55821021 to 55821028 7 - TSS region transcription start site region 116356
Gm23394 12 55821063 to 55821153 90 - miRNA gene predicted gene, 23394
Tssr116357 12 55821073 to 55821084 11 - TSS region transcription start site region 116357
Tssr116358 12 55821098 to 55821110 12 - TSS region transcription start site region 116358
Tssr116359 12 55821137 to 55821149 12 - TSS region transcription start site region 116359
Tssr116360 12 55821157 to 55821195 38 - TSS region transcription start site region 116360
Tssr116361 12 55821196 to 55821207 11 - TSS region transcription start site region 116361
Cpgi4624 12 55836157 to 55837122 965 CpG island CpG island 4624
Tssr113505 12 55836317 to 55836330 13 + TSS region transcription start site region 113505
Brms1l 12 55836324 to 55869736 33412 + protein coding gene breast cancer metastasis-suppressor 1-like
Tssr113506 12 55836332 to 55836361 29 + TSS region transcription start site region 113506
Tssr113507 12 55836365 to 55836408 43 + TSS region transcription start site region 113507
Tssr113508 12 55847727 to 55847731 4 + TSS region transcription start site region 113508
Cpgi4625 12 55861011 to 55861221 210 CpG island CpG island 4625
Gm22296 12 55910821 to 55910923 102 - snRNA gene predicted gene, 22296
Cpgi4626 12 55916781 to 55917384 603 CpG island CpG island 4626
Tssr3846 12 55961506 to 55961511 5 - TSS region transcription start site region 3846
Gm5183 12 56050533 to 56051161 628 + pseudogene predicted gene 5183
Gm23799 12 56056636 to 56056755 119 - rRNA gene predicted gene, 23799
Cpgi4627 12 56058525 to 56058728 203 CpG island CpG island 4627
Gm5184 12 56189414 to 56191115 1701 + pseudogene predicted gene 5184
Gm36754 12 56235144 to 56239259 4115 - lncRNA gene predicted gene, 36754
Gm47682 12 56246648 to 56254398 7750 - lincRNA gene predicted gene, 47682
Gm25917 12 56252315 to 56252444 129 - snoRNA gene predicted gene, 25917
Tssr113509 12 56253147 to 56253162 15 + TSS region transcription start site region 113509
Tssr113510 12 56253188 to 56253212 24 + TSS region transcription start site region 113510
Tssr113511 12 56253228 to 56253248 20 + TSS region transcription start site region 113511
Gm19990 12 56253243 to 56266381 13138 + lincRNA gene predicted gene, 19990
Tssr113512 12 56253250 to 56253261 11 + TSS region transcription start site region 113512
Gm46351 12 56266003 to 56275945 9942 - lncRNA gene predicted gene, 46351
Gm24685 12 56266920 to 56267204 284 - unclassified non-coding RNA gene predicted gene, 24685
Cpgi4628 12 56275603 to 56275755 152 CpG island CpG island 4628
Tssr116362 12 56275703 to 56275729 26 - TSS region transcription start site region 116362
Tssr116363 12 56275734 to 56275766 32 - TSS region transcription start site region 116363
Cpgi4629 12 56286713 to 56287018 305 CpG island CpG island 4629
Tssr113513 12 56289166 to 56289174 8 + TSS region transcription start site region 113513
Tssr113514 12 56289227 to 56289234 7 + TSS region transcription start site region 113514
Cpgi4630 12 56301913 to 56302191 278 CpG island CpG island 4630
Mbip 12 56328306 to 56345895 17589 - protein coding gene MAP3K12 binding inhibitory protein 1