Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:54907109-55389896

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Baz1a 12 54892989 to 55014348 121359 - protein coding gene bromodomain adjacent to zinc finger domain 1A
Tssr116319 12 54923102 to 54923143 41 - TSS region transcription start site region 116319
Tssr116320 12 54937678 to 54937685 7 - TSS region transcription start site region 116320
D12Dcr2 12 54956752 to 54956859 107 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 2
Gm27014 12 54963064 to 54964200 1136 + pseudogene predicted gene, 27014
Cpgi4613 12 54984551 to 54986641 2090 CpG island CpG island 4613
Gm20403 12 54986158 to 54986529 371 - protein coding gene predicted gene 20403
Tssr116321 12 54986303 to 54986308 5 - TSS region transcription start site region 116321
Tssr116322 12 54986328 to 54986342 14 - TSS region transcription start site region 116322
Tssr116323 12 54986345 to 54986362 17 - TSS region transcription start site region 116323
Tssr116324 12 54986363 to 54986381 18 - TSS region transcription start site region 116324
Gm24296 12 54997072 to 54997177 105 + snRNA gene predicted gene, 24296
Tssr116325 12 54999120 to 54999142 22 - TSS region transcription start site region 116325
Tssr116326 12 55014329 to 55014353 24 - TSS region transcription start site region 116326
Tssr116327 12 55014355 to 55014373 18 - TSS region transcription start site region 116327
Tssr116328 12 55015698 to 55015713 15 - TSS region transcription start site region 116328
2700097O09Rik 12 55045661 to 55080110 34449 - protein coding gene RIKEN cDNA 2700097O09 gene
Tssr116329 12 55053472 to 55053506 34 - TSS region transcription start site region 116329
Gm46350 12 55066503 to 55066917 414 - pseudogene predicted gene, 46350
Gm7511 12 55067752 to 55068201 449 - pseudogene predicted gene 7511
Cpgi4614 12 55080079 to 55080710 631 CpG island CpG island 4614
Tssr116330 12 55080098 to 55080121 23 - TSS region transcription start site region 116330
Tssr116331 12 55080130 to 55080139 9 - TSS region transcription start site region 116331
Tssr113479 12 55080214 to 55080235 21 + TSS region transcription start site region 113479
Srp54a 12 55080496 to 55115367 34871 + protein coding gene signal recognition particle 54A
Tssr113480 12 55080528 to 55080560 32 + TSS region transcription start site region 113480
Fam177a 12 55124469 to 55142104 17635 + protein coding gene family with sequence similarity 177, member A
Gm2436 12 55142109 to 55151007 8898 - protein coding gene predicted gene 2436
Gm48340 12 55152450 to 55152854 404 + pseudogene predicted gene, 48340
Srp54b 12 55155104 to 55189213 34109 + protein coding gene signal recognition particle 54B
1700047I17Rik2 12 55199592 to 55217168 17576 + protein coding gene RIKEN cDNA 1700047I17 gene 2
Gm2446 12 55217176 to 55226072 8896 - protein coding gene predicted gene 2446
Gm48352 12 55227514 to 55227918 404 + pseudogene predicted gene, 48352
Srp54c 12 55230168 to 55263836 33668 + protein coding gene signal recognition particle 54C
Gm49376 12 55275381 to 55278714 3333 + pseudogene predicted gene, 49376
Ppp2r3c 12 55280809 to 55303005 22196 - protein coding gene protein phosphatase 2, regulatory subunit B'', gamma
Cpgi4615 12 55302501 to 55303232 731 CpG island CpG island 4615
Tssr116332 12 55302620 to 55302623 3 - TSS region transcription start site region 116332
1110008L16Rik 12 55302637 to 55382492 79855 + protein coding gene RIKEN cDNA 1110008L16 gene
Tssr116333 12 55302645 to 55302725 80 - TSS region transcription start site region 116333
Tssr116334 12 55302737 to 55302746 9 - TSS region transcription start site region 116334
Tssr113481 12 55302744 to 55302784 40 + TSS region transcription start site region 113481
Tssr116335 12 55302767 to 55302778 11 - TSS region transcription start site region 116335
Tssr113482 12 55302824 to 55302864 40 + TSS region transcription start site region 113482
Tssr116336 12 55302959 to 55302968 9 - TSS region transcription start site region 116336
Tssr116337 12 55302974 to 55303014 40 - TSS region transcription start site region 116337
Tssr113483 12 55303241 to 55303284 43 + TSS region transcription start site region 113483
Cpgi4616 12 55321659 to 55321810 151 CpG island CpG island 4616
Tssr113484 12 55361348 to 55361391 43 + TSS region transcription start site region 113484
Tssr116338 12 55376019 to 55376022 3 - TSS region transcription start site region 116338
Tssr113485 12 55377139 to 55377158 19 + TSS region transcription start site region 113485
Tssr113486 12 55377160 to 55377211 51 + TSS region transcription start site region 113486
Psma6 12 55384222 to 55418454 34232 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 6
Tssr113487 12 55384227 to 55384261 34 + TSS region transcription start site region 113487
Tssr113488 12 55384756 to 55384766 10 + TSS region transcription start site region 113488