Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:54709551-55261641

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm22634 12 54710308 to 54710471 163 + snRNA gene predicted gene, 22634
Gm23804 12 54714218 to 54714381 163 + snRNA gene predicted gene, 23804
Gm2395 12 54716796 to 54717219 423 + pseudogene predicted gene 2395
Gm25679 12 54719163 to 54719326 163 - snRNA gene predicted gene, 25679
Gm26444 12 54729602 to 54729765 163 + snRNA gene predicted gene, 26444
Gm2412 12 54731716 to 54732141 425 - pseudogene predicted gene 2412
Gm24305 12 54734555 to 54734718 163 - snRNA gene predicted gene, 24305
Tssr116306 12 54734715 to 54734719 4 - TSS region transcription start site region 116306
Gm22317 12 54738459 to 54738622 163 - snRNA gene predicted gene, 22317
Snx6 12 54746349 to 54795703 49354 - protein coding gene sorting nexin 6
Cpgi4611 12 54795095 to 54795974 879 CpG island CpG island 4611
Tssr116307 12 54795660 to 54795696 36 - TSS region transcription start site region 116307
Tssr116308 12 54795698 to 54795714 16 - TSS region transcription start site region 116308
Tssr116309 12 54795717 to 54795724 7 - TSS region transcription start site region 116309
Cfl2 12 54858817 to 54862877 4060 - protein coding gene cofilin 2, muscle
Opfaq8 12 54860868 to 57823799 2962931 QTL open field activity QTL 8
Tssr116310 12 54861082 to 54861099 17 - TSS region transcription start site region 116310
Cpgi4612 12 54862045 to 54863272 1227 CpG island CpG island 4612
Tssr116311 12 54862466 to 54862488 22 - TSS region transcription start site region 116311
Tssr116312 12 54862497 to 54862517 20 - TSS region transcription start site region 116312
1700081N11Rik 12 54862647 to 54863667 1020 + bidirectional promoter lncRNA gene RIKEN cDNA 1700081N11 gene
Tssr116313 12 54862672 to 54862691 19 - TSS region transcription start site region 116313
Tssr116314 12 54862783 to 54862921 138 - TSS region transcription start site region 116314
Tssr113478 12 54862969 to 54862997 28 + TSS region transcription start site region 113478
Tssr116315 12 54863024 to 54863070 46 - TSS region transcription start site region 116315
Tssr116316 12 54863071 to 54863101 30 - TSS region transcription start site region 116316
Tssr116317 12 54867199 to 54867203 4 - TSS region transcription start site region 116317
Tssr116318 12 54892574 to 54892580 6 - TSS region transcription start site region 116318
Baz1a 12 54892989 to 55014348 121359 - protein coding gene bromodomain adjacent to zinc finger domain 1A
Tssr116319 12 54923102 to 54923143 41 - TSS region transcription start site region 116319
Tssr116320 12 54937678 to 54937685 7 - TSS region transcription start site region 116320
D12Dcr2 12 54956752 to 54956859 107 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 2
Gm27014 12 54963064 to 54964200 1136 + pseudogene predicted gene, 27014
Cpgi4613 12 54984551 to 54986641 2090 CpG island CpG island 4613
Gm20403 12 54986158 to 54986529 371 - protein coding gene predicted gene 20403
Tssr116321 12 54986303 to 54986308 5 - TSS region transcription start site region 116321
Tssr116322 12 54986328 to 54986342 14 - TSS region transcription start site region 116322
Tssr116323 12 54986345 to 54986362 17 - TSS region transcription start site region 116323
Tssr116324 12 54986363 to 54986381 18 - TSS region transcription start site region 116324
Gm24296 12 54997072 to 54997177 105 + snRNA gene predicted gene, 24296
Tssr116325 12 54999120 to 54999142 22 - TSS region transcription start site region 116325
Tssr116326 12 55014329 to 55014353 24 - TSS region transcription start site region 116326
Tssr116327 12 55014355 to 55014373 18 - TSS region transcription start site region 116327
Tssr116328 12 55015698 to 55015713 15 - TSS region transcription start site region 116328
2700097O09Rik 12 55045661 to 55080110 34449 - protein coding gene RIKEN cDNA 2700097O09 gene
Tssr116329 12 55053472 to 55053506 34 - TSS region transcription start site region 116329
Gm46350 12 55066503 to 55066917 414 - pseudogene predicted gene, 46350
Gm7511 12 55067752 to 55068201 449 - pseudogene predicted gene 7511
Cpgi4614 12 55080079 to 55080710 631 CpG island CpG island 4614
Tssr116330 12 55080098 to 55080121 23 - TSS region transcription start site region 116330
Tssr116331 12 55080130 to 55080139 9 - TSS region transcription start site region 116331
Tssr113479 12 55080214 to 55080235 21 + TSS region transcription start site region 113479
Srp54a 12 55080496 to 55115367 34871 + protein coding gene signal recognition particle 54A
Tssr113480 12 55080528 to 55080560 32 + TSS region transcription start site region 113480
Fam177a 12 55124469 to 55142104 17635 + protein coding gene family with sequence similarity 177, member A
Gm2436 12 55142109 to 55151007 8898 - protein coding gene predicted gene 2436
Gm48340 12 55152450 to 55152854 404 + pseudogene predicted gene, 48340
Srp54b 12 55155104 to 55189213 34109 + protein coding gene signal recognition particle 54B
1700047I17Rik2 12 55199592 to 55217168 17576 + protein coding gene RIKEN cDNA 1700047I17 gene 2
Gm2446 12 55217176 to 55226072 8896 - protein coding gene predicted gene 2446
Gm48352 12 55227514 to 55227918 404 + pseudogene predicted gene, 48352
Srp54c 12 55230168 to 55263836 33668 + protein coding gene signal recognition particle 54C