Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:54655476-55540367

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sptssa 12 54645392 to 54656573 11181 - protein coding gene serine palmitoyltransferase, small subunit A
Cpgi4609 12 54656079 to 54656945 866 CpG island CpG island 4609
Tssr116299 12 54656496 to 54656517 21 - TSS region transcription start site region 116299
Tssr113476 12 54656752 to 54656774 22 + TSS region transcription start site region 113476
Tssr113477 12 54656808 to 54656813 5 + TSS region transcription start site region 113477
Gm40884 12 54658820 to 54659907 1087 + lincRNA gene predicted gene, 40884
Gm24971 12 54666677 to 54666786 109 - rRNA gene predicted gene, 24971
Eapp 12 54670340 to 54695897 25557 - protein coding gene E2F-associated phosphoprotein
Gm36262 12 54679311 to 54679809 498 - pseudogene predicted gene, 36262
Gm20947 12 54688934 to 54690288 1354 - pseudogene predicted gene, 20947
Tssr116300 12 54695276 to 54695283 7 - TSS region transcription start site region 116300
Cpgi4610 12 54695429 to 54696159 730 CpG island CpG island 4610
Tssr116301 12 54695786 to 54695797 11 - TSS region transcription start site region 116301
Tssr116302 12 54695813 to 54695828 15 - TSS region transcription start site region 116302
Tssr116303 12 54695829 to 54695884 55 - TSS region transcription start site region 116303
Tssr116304 12 54695885 to 54695893 8 - TSS region transcription start site region 116304
Gm22513 12 54696782 to 54696945 163 + snRNA gene predicted gene, 22513
Rpl31-ps17 12 54701329 to 54701706 377 - pseudogene ribosomal protein L31, pseudogene 17
Tssr116305 12 54701729 to 54701730 1 - TSS region transcription start site region 116305
Gm22634 12 54710308 to 54710471 163 + snRNA gene predicted gene, 22634
Gm23804 12 54714218 to 54714381 163 + snRNA gene predicted gene, 23804
Gm2395 12 54716796 to 54717219 423 + pseudogene predicted gene 2395
Gm25679 12 54719163 to 54719326 163 - snRNA gene predicted gene, 25679
Gm26444 12 54729602 to 54729765 163 + snRNA gene predicted gene, 26444
Gm2412 12 54731716 to 54732141 425 - pseudogene predicted gene 2412
Gm24305 12 54734555 to 54734718 163 - snRNA gene predicted gene, 24305
Tssr116306 12 54734715 to 54734719 4 - TSS region transcription start site region 116306
Gm22317 12 54738459 to 54738622 163 - snRNA gene predicted gene, 22317
Snx6 12 54746349 to 54795703 49354 - protein coding gene sorting nexin 6
Cpgi4611 12 54795095 to 54795974 879 CpG island CpG island 4611
Tssr116307 12 54795660 to 54795696 36 - TSS region transcription start site region 116307
Tssr116308 12 54795698 to 54795714 16 - TSS region transcription start site region 116308
Tssr116309 12 54795717 to 54795724 7 - TSS region transcription start site region 116309
Cfl2 12 54858817 to 54862877 4060 - protein coding gene cofilin 2, muscle
Opfaq8 12 54860868 to 57823799 2962931 QTL open field activity QTL 8
Tssr116310 12 54861082 to 54861099 17 - TSS region transcription start site region 116310
Cpgi4612 12 54862045 to 54863272 1227 CpG island CpG island 4612
Tssr116311 12 54862466 to 54862488 22 - TSS region transcription start site region 116311
Tssr116312 12 54862497 to 54862517 20 - TSS region transcription start site region 116312
1700081N11Rik 12 54862647 to 54863667 1020 + bidirectional promoter lncRNA gene RIKEN cDNA 1700081N11 gene
Tssr116313 12 54862672 to 54862691 19 - TSS region transcription start site region 116313
Tssr116314 12 54862783 to 54862921 138 - TSS region transcription start site region 116314
Tssr113478 12 54862969 to 54862997 28 + TSS region transcription start site region 113478
Tssr116315 12 54863024 to 54863070 46 - TSS region transcription start site region 116315
Tssr116316 12 54863071 to 54863101 30 - TSS region transcription start site region 116316
Tssr116317 12 54867199 to 54867203 4 - TSS region transcription start site region 116317
Tssr116318 12 54892574 to 54892580 6 - TSS region transcription start site region 116318
Baz1a 12 54892989 to 55014348 121359 - protein coding gene bromodomain adjacent to zinc finger domain 1A
Tssr116319 12 54923102 to 54923143 41 - TSS region transcription start site region 116319
Tssr116320 12 54937678 to 54937685 7 - TSS region transcription start site region 116320
D12Dcr2 12 54956752 to 54956859 107 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 2
Gm27014 12 54963064 to 54964200 1136 + pseudogene predicted gene, 27014
Cpgi4613 12 54984551 to 54986641 2090 CpG island CpG island 4613
Gm20403 12 54986158 to 54986529 371 - protein coding gene predicted gene 20403
Tssr116321 12 54986303 to 54986308 5 - TSS region transcription start site region 116321
Tssr116322 12 54986328 to 54986342 14 - TSS region transcription start site region 116322
Tssr116323 12 54986345 to 54986362 17 - TSS region transcription start site region 116323
Tssr116324 12 54986363 to 54986381 18 - TSS region transcription start site region 116324
Gm24296 12 54997072 to 54997177 105 + snRNA gene predicted gene, 24296
Tssr116325 12 54999120 to 54999142 22 - TSS region transcription start site region 116325
Tssr116326 12 55014329 to 55014353 24 - TSS region transcription start site region 116326
Tssr116327 12 55014355 to 55014373 18 - TSS region transcription start site region 116327
Tssr116328 12 55015698 to 55015713 15 - TSS region transcription start site region 116328
2700097O09Rik 12 55045661 to 55080110 34449 - protein coding gene RIKEN cDNA 2700097O09 gene
Tssr116329 12 55053472 to 55053506 34 - TSS region transcription start site region 116329
Gm46350 12 55066503 to 55066917 414 - pseudogene predicted gene, 46350
Gm7511 12 55067752 to 55068201 449 - pseudogene predicted gene 7511
Cpgi4614 12 55080079 to 55080710 631 CpG island CpG island 4614
Tssr116330 12 55080098 to 55080121 23 - TSS region transcription start site region 116330
Tssr116331 12 55080130 to 55080139 9 - TSS region transcription start site region 116331
Tssr113479 12 55080214 to 55080235 21 + TSS region transcription start site region 113479
Srp54a 12 55080496 to 55115367 34871 + protein coding gene signal recognition particle 54A
Tssr113480 12 55080528 to 55080560 32 + TSS region transcription start site region 113480
Fam177a 12 55124469 to 55142104 17635 + protein coding gene family with sequence similarity 177, member A
Gm2436 12 55142109 to 55151007 8898 - protein coding gene predicted gene 2436
Gm48340 12 55152450 to 55152854 404 + pseudogene predicted gene, 48340
Srp54b 12 55155104 to 55189213 34109 + protein coding gene signal recognition particle 54B
1700047I17Rik2 12 55199592 to 55217168 17576 + protein coding gene RIKEN cDNA 1700047I17 gene 2
Gm2446 12 55217176 to 55226072 8896 - protein coding gene predicted gene 2446
Gm48352 12 55227514 to 55227918 404 + pseudogene predicted gene, 48352
Srp54c 12 55230168 to 55263836 33668 + protein coding gene signal recognition particle 54C
Gm49376 12 55275381 to 55278714 3333 + pseudogene predicted gene, 49376
Ppp2r3c 12 55280809 to 55303005 22196 - protein coding gene protein phosphatase 2, regulatory subunit B'', gamma
Cpgi4615 12 55302501 to 55303232 731 CpG island CpG island 4615
Tssr116332 12 55302620 to 55302623 3 - TSS region transcription start site region 116332
1110008L16Rik 12 55302637 to 55382492 79855 + protein coding gene RIKEN cDNA 1110008L16 gene
Tssr116333 12 55302645 to 55302725 80 - TSS region transcription start site region 116333
Tssr116334 12 55302737 to 55302746 9 - TSS region transcription start site region 116334
Tssr113481 12 55302744 to 55302784 40 + TSS region transcription start site region 113481
Tssr116335 12 55302767 to 55302778 11 - TSS region transcription start site region 116335
Tssr113482 12 55302824 to 55302864 40 + TSS region transcription start site region 113482
Tssr116336 12 55302959 to 55302968 9 - TSS region transcription start site region 116336
Tssr116337 12 55302974 to 55303014 40 - TSS region transcription start site region 116337
Tssr113483 12 55303241 to 55303284 43 + TSS region transcription start site region 113483
Cpgi4616 12 55321659 to 55321810 151 CpG island CpG island 4616
Tssr113484 12 55361348 to 55361391 43 + TSS region transcription start site region 113484
Tssr116338 12 55376019 to 55376022 3 - TSS region transcription start site region 116338
Tssr113485 12 55377139 to 55377158 19 + TSS region transcription start site region 113485
Tssr113486 12 55377160 to 55377211 51 + TSS region transcription start site region 113486
Psma6 12 55384222 to 55418454 34232 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 6
Tssr113487 12 55384227 to 55384261 34 + TSS region transcription start site region 113487
Tssr113488 12 55384756 to 55384766 10 + TSS region transcription start site region 113488
D730047E02Rik 12 55390269 to 55391501 1232 unclassified gene RIKEN cDNA D730047E02 gene
Tssr116339 12 55391496 to 55391505 9 - TSS region transcription start site region 116339
Rpl18a-ps1 12 55395707 to 55396229 522 - pseudogene ribosomal protein L18A, pseudogene 1
Cpgi4617 12 55398538 to 55399377 839 CpG island CpG island 4617
Tssr116340 12 55398677 to 55398744 67 - TSS region transcription start site region 116340
Tssr113489 12 55398814 to 55398894 80 + TSS region transcription start site region 113489
Tssr113490 12 55398920 to 55398931 11 + TSS region transcription start site region 113490
Tssr113491 12 55399789 to 55399839 50 + TSS region transcription start site region 113491
Tssr113492 12 55410281 to 55410286 5 + TSS region transcription start site region 113492
Tssr113493 12 55410426 to 55410431 5 + TSS region transcription start site region 113493
Cpgi4618 12 55420199 to 55420846 647 CpG island CpG island 4618
Gm2468 12 55423123 to 55423680 557 + pseudogene predicted gene 2468
Gm36571 12 55428879 to 55432788 3909 - lncRNA gene predicted gene, 36571
Tssr113494 12 55446926 to 55446932 6 + TSS region transcription start site region 113494
D12Mit67 12 55451990 to 55452150 160 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 67
Tssr113495 12 55465802 to 55465825 23 + TSS region transcription start site region 113495
Tssr113496 12 55465848 to 55465864 16 + TSS region transcription start site region 113496
Tssr116341 12 55466365 to 55466372 7 - TSS region transcription start site region 116341
Tssr113497 12 55467945 to 55467951 6 + TSS region transcription start site region 113497
Tssr113498 12 55489409 to 55489415 6 + TSS region transcription start site region 113498
Nfkbia 12 55489410 to 55492647 3237 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha
Tssr116342 12 55489647 to 55489666 19 - TSS region transcription start site region 116342
Tssr116343 12 55489809 to 55489824 15 - TSS region transcription start site region 116343
Tssr116344 12 55489925 to 55489980 55 - TSS region transcription start site region 116344
Tssr113499 12 55490404 to 55490453 49 + TSS region transcription start site region 113499
Tssr116345 12 55490436 to 55490458 22 - TSS region transcription start site region 116345
Tssr116346 12 55490538 to 55490572 34 - TSS region transcription start site region 116346
Tssr116347 12 55491179 to 55491197 18 - TSS region transcription start site region 116347
Tssr116348 12 55491306 to 55491317 11 - TSS region transcription start site region 116348
Tssr116349 12 55491447 to 55491467 20 - TSS region transcription start site region 116349
Tssr116350 12 55491488 to 55491498 10 - TSS region transcription start site region 116350
Cpgi4619 12 55491563 to 55492861 1298 CpG island CpG island 4619
Tssr116351 12 55491700 to 55491715 15 - TSS region transcription start site region 116351
Tssr116352 12 55491738 to 55491777 39 - TSS region transcription start site region 116352
Tssr116353 12 55491781 to 55491801 20 - TSS region transcription start site region 116353
Tssr116354 12 55492587 to 55492605 18 - TSS region transcription start site region 116354
Tssr113500 12 55492698 to 55492727 29 + TSS region transcription start site region 113500
Gm36634 12 55497721 to 55499951 2230 + lncRNA gene predicted gene, 36634
Tssr113501 12 55507834 to 55507860 26 + TSS region transcription start site region 113501
Cpgi4620 12 55507841 to 55508000 159 CpG island CpG island 4620