Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:54128981-54253860

19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr113467	12	54135136 to 54135157	21	+	TSS region	transcription start site region 113467
Tssr113468	12	54135158 to 54135170	12	+	TSS region	transcription start site region 113468
Tssr116288	12	54141911 to 54141923	12	-	TSS region	transcription start site region 116288
Tssr3843	12	54141928 to 54141944	16	-	TSS region	transcription start site region 3843
Cpgi4605	12	54162778 to 54163158	380		CpG island	CpG island 4605
Gm40424	12	54177087 to 54178963	1876	+	lncRNA gene	predicted gene, 40424
Egln3	12	54178981 to 54203860	24879	-	protein coding gene	egl-9 family hypoxia-inducible factor 3
Tssr116289	12	54179512 to 54179530	18	-	TSS region	transcription start site region 116289
Cpgi4606	12	54192001 to 54192153	152		CpG island	CpG island 4606
Cpgi4607	12	54202893 to 54203933	1040		CpG island	CpG island 4607
Tssr116290	12	54203273 to 54203297	24	-	TSS region	transcription start site region 116290
Tssr116291	12	54203794 to 54203811	17	-	TSS region	transcription start site region 116291
Tssr116292	12	54203822 to 54203838	16	-	TSS region	transcription start site region 116292
Tssr116293	12	54203844 to 54203857	13	-	TSS region	transcription start site region 116293
Tssr116294	12	54203861 to 54203887	26	-	TSS region	transcription start site region 116294
1700104L18Rik	12	54233615 to 54242320	8705	+	lincRNA gene	RIKEN cDNA 1700104L18 gene
Gm22220	12	54239238 to 54239386	148	+	snRNA gene	predicted gene, 22220
Tssr113469	12	54239238 to 54239245	7	+	TSS region	transcription start site region 113469
Gm24692	12	54240755 to 54240900	145	-	snRNA gene	predicted gene, 24692