Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:53940824-54763264

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Npas3 12 53248677 to 54072175 823498 + protein coding gene neuronal PAS domain protein 3
D12Mit189 12 53971829 to 53972026 197 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 189
Gm46308 12 54019760 to 54031370 11610 - lncRNA gene predicted gene, 46308
1700060O08Rik 12 54062048 to 54079392 17344 - antisense lncRNA gene RIKEN cDNA 1700060O08 gene
Cpgi4604 12 54067522 to 54069191 1669 CpG island CpG island 4604
Gm35818 12 54091430 to 54106885 15455 - lincRNA gene predicted gene, 35818
D12Mit199 12 54097932 to 54098096 164 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 199
Tssr113467 12 54135136 to 54135157 21 + TSS region transcription start site region 113467
Tssr113468 12 54135158 to 54135170 12 + TSS region transcription start site region 113468
Tssr116288 12 54141911 to 54141923 12 - TSS region transcription start site region 116288
Tssr3843 12 54141928 to 54141944 16 - TSS region transcription start site region 3843
Cpgi4605 12 54162778 to 54163158 380 CpG island CpG island 4605
Gm40424 12 54177087 to 54178963 1876 + lncRNA gene predicted gene, 40424
Egln3 12 54178981 to 54203860 24879 - protein coding gene egl-9 family hypoxia-inducible factor 3
Tssr116289 12 54179512 to 54179530 18 - TSS region transcription start site region 116289
Cpgi4606 12 54192001 to 54192153 152 CpG island CpG island 4606
Cpgi4607 12 54202893 to 54203933 1040 CpG island CpG island 4607
Tssr116290 12 54203273 to 54203297 24 - TSS region transcription start site region 116290
Tssr116291 12 54203794 to 54203811 17 - TSS region transcription start site region 116291
Tssr116292 12 54203822 to 54203838 16 - TSS region transcription start site region 116292
Tssr116293 12 54203844 to 54203857 13 - TSS region transcription start site region 116293
Tssr116294 12 54203861 to 54203887 26 - TSS region transcription start site region 116294
1700104L18Rik 12 54233615 to 54242320 8705 + lincRNA gene RIKEN cDNA 1700104L18 gene
Gm22220 12 54239238 to 54239386 148 + snRNA gene predicted gene, 22220
Tssr113469 12 54239238 to 54239245 7 + TSS region transcription start site region 113469
Gm24692 12 54240755 to 54240900 145 - snRNA gene predicted gene, 24692
Tssr116295 12 54289748 to 54289751 3 - TSS region transcription start site region 116295
D12Mit31 12 54310282 to 54310668 386 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 31
Cpgi4608 12 54313103 to 54313489 386 CpG island CpG island 4608
Gm47552 12 54316164 to 54317015 851 - lincRNA gene predicted gene, 47552
Tssr113470 12 54343701 to 54343716 15 + TSS region transcription start site region 113470
Tssr113471 12 54343717 to 54343731 14 + TSS region transcription start site region 113471
Tssr113472 12 54343734 to 54343745 11 + TSS region transcription start site region 113472
Tssr113473 12 54343746 to 54343765 19 + TSS region transcription start site region 113473
Gm35895 12 54350824 to 54353264 2440 + lncRNA gene predicted gene, 35895
D12Mit66 12 54351421 to 54351568 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 66
Tssr116296 12 54369305 to 54369355 50 - TSS region transcription start site region 116296
Tssr3844 12 54374353 to 54374358 5 + TSS region transcription start site region 3844
Gm7550 12 54388042 to 54391318 3276 - lincRNA gene predicted gene 7550
Gm46328 12 54400204 to 54405656 5452 + lincRNA gene predicted gene, 46328
Tssr113474 12 54428035 to 54428044 9 + TSS region transcription start site region 113474
Gm47553 12 54428077 to 54428556 479 + pseudogene predicted gene, 47553
Gm7557 12 54429534 to 54430398 864 - pseudogene predicted gene 7557
Tssr116297 12 54459472 to 54459478 6 - TSS region transcription start site region 116297
Gm36213 12 54463133 to 54479471 16338 - lncRNA gene predicted gene, 36213
Gm10465 12 54512421 to 54517079 4658 - lincRNA gene predicted gene 10465
Gm40425 12 54549885 to 54553804 3919 + lncRNA gene predicted gene, 40425
Tssr3845 12 54559233 to 54559246 13 + TSS region transcription start site region 3845
Tssr113475 12 54622530 to 54622575 45 + TSS region transcription start site region 113475
Gm6218 12 54622590 to 54623217 627 + pseudogene predicted gene 6218
D12Mit88 12 54638868 to 54639009 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 88
Sptssa 12 54645392 to 54656573 11181 - protein coding gene serine palmitoyltransferase, small subunit A
Mir1892 12 54645933 to 54646012 79 - miRNA gene microRNA 1892
Ahrq1 12 54649125 to 82619165 27970040 QTL airway hyperresponsiveness QTL 1
D12Mit285 12 54649125 to 54649249 124 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 285
Tssr116298 12 54649871 to 54649877 6 - TSS region transcription start site region 116298
Cpgi4609 12 54656079 to 54656945 866 CpG island CpG island 4609
Tssr116299 12 54656496 to 54656517 21 - TSS region transcription start site region 116299
Tssr113476 12 54656752 to 54656774 22 + TSS region transcription start site region 113476
Tssr113477 12 54656808 to 54656813 5 + TSS region transcription start site region 113477
Gm40884 12 54658820 to 54659907 1087 + lincRNA gene predicted gene, 40884
Gm24971 12 54666677 to 54666786 109 - rRNA gene predicted gene, 24971
Eapp 12 54670340 to 54695897 25557 - protein coding gene E2F-associated phosphoprotein
Gm36262 12 54679311 to 54679809 498 - pseudogene predicted gene, 36262
Gm20947 12 54688934 to 54690288 1354 - pseudogene predicted gene, 20947
Tssr116300 12 54695276 to 54695283 7 - TSS region transcription start site region 116300
Cpgi4610 12 54695429 to 54696159 730 CpG island CpG island 4610
Tssr116301 12 54695786 to 54695797 11 - TSS region transcription start site region 116301
Tssr116302 12 54695813 to 54695828 15 - TSS region transcription start site region 116302
Tssr116303 12 54695829 to 54695884 55 - TSS region transcription start site region 116303
Tssr116304 12 54695885 to 54695893 8 - TSS region transcription start site region 116304
Gm22513 12 54696782 to 54696945 163 + snRNA gene predicted gene, 22513
Rpl31-ps17 12 54701329 to 54701706 377 - pseudogene ribosomal protein L31, pseudogene 17
Tssr116305 12 54701729 to 54701730 1 - TSS region transcription start site region 116305
Gm22634 12 54710308 to 54710471 163 + snRNA gene predicted gene, 22634
Gm23804 12 54714218 to 54714381 163 + snRNA gene predicted gene, 23804
Gm2395 12 54716796 to 54717219 423 + pseudogene predicted gene 2395
Gm25679 12 54719163 to 54719326 163 - snRNA gene predicted gene, 25679
Gm26444 12 54729602 to 54729765 163 + snRNA gene predicted gene, 26444
Gm2412 12 54731716 to 54732141 425 - pseudogene predicted gene 2412
Gm24305 12 54734555 to 54734718 163 - snRNA gene predicted gene, 24305
Tssr116306 12 54734715 to 54734719 4 - TSS region transcription start site region 116306
Gm22317 12 54738459 to 54738622 163 - snRNA gene predicted gene, 22317
Snx6 12 54746349 to 54795703 49354 - protein coding gene sorting nexin 6