Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:53354936-54326520

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Npas3 12 53248677 to 54072175 823498 + protein coding gene neuronal PAS domain protein 3
D12Mit87 12 53592181 to 53592394 213 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 87
Tssr3842 12 53737716 to 53737753 37 + TSS region transcription start site region 3842
Tssr113465 12 53783605 to 53783609 4 + TSS region transcription start site region 113465
Gm35614 12 53834936 to 53846520 11584 + lncRNA gene predicted gene, 35614
Cpgi4603 12 53835905 to 53836352 447 CpG island CpG island 4603
Tssr113466 12 53838839 to 53838876 37 + TSS region transcription start site region 113466
D12Mit54 12 53859602 to 53859751 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 54
D12Mit189 12 53971829 to 53972026 197 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 189
Gm46308 12 54019760 to 54031370 11610 - lncRNA gene predicted gene, 46308
1700060O08Rik 12 54062048 to 54079392 17344 - antisense lncRNA gene RIKEN cDNA 1700060O08 gene
Cpgi4604 12 54067522 to 54069191 1669 CpG island CpG island 4604
Gm35818 12 54091430 to 54106885 15455 - lincRNA gene predicted gene, 35818
D12Mit199 12 54097932 to 54098096 164 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 199
Tssr113467 12 54135136 to 54135157 21 + TSS region transcription start site region 113467
Tssr113468 12 54135158 to 54135170 12 + TSS region transcription start site region 113468
Tssr116288 12 54141911 to 54141923 12 - TSS region transcription start site region 116288
Tssr3843 12 54141928 to 54141944 16 - TSS region transcription start site region 3843
Cpgi4605 12 54162778 to 54163158 380 CpG island CpG island 4605
Gm40424 12 54177087 to 54178963 1876 + lncRNA gene predicted gene, 40424
Egln3 12 54178981 to 54203860 24879 - protein coding gene egl-9 family hypoxia-inducible factor 3
Tssr116289 12 54179512 to 54179530 18 - TSS region transcription start site region 116289
Cpgi4606 12 54192001 to 54192153 152 CpG island CpG island 4606
Cpgi4607 12 54202893 to 54203933 1040 CpG island CpG island 4607
Tssr116290 12 54203273 to 54203297 24 - TSS region transcription start site region 116290
Tssr116291 12 54203794 to 54203811 17 - TSS region transcription start site region 116291
Tssr116292 12 54203822 to 54203838 16 - TSS region transcription start site region 116292
Tssr116293 12 54203844 to 54203857 13 - TSS region transcription start site region 116293
Tssr116294 12 54203861 to 54203887 26 - TSS region transcription start site region 116294
1700104L18Rik 12 54233615 to 54242320 8705 + lincRNA gene RIKEN cDNA 1700104L18 gene
Tssr113469 12 54239238 to 54239245 7 + TSS region transcription start site region 113469
Gm22220 12 54239238 to 54239386 148 + snRNA gene predicted gene, 22220
Gm24692 12 54240755 to 54240900 145 - snRNA gene predicted gene, 24692
Tssr116295 12 54289748 to 54289751 3 - TSS region transcription start site region 116295
D12Mit31 12 54310282 to 54310668 386 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 31
Cpgi4608 12 54313103 to 54313489 386 CpG island CpG island 4608
Gm47552 12 54316164 to 54317015 851 - lincRNA gene predicted gene, 47552