Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:52891872-53612036

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20 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Akap6 12 52699383 to 53155599 456216 + protein coding gene A kinase (PRKA) anchor protein 6
D12Mit126 12 53028586 to 53028721 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 126
n-R5s58 12 53046708 to 53046826 118 - rRNA gene nuclear encoded rRNA 5S 58
Opfaq11 12 53108841 to 57229970 4121129 QTL open field activity QTL 11
Gm18898 12 53114220 to 53115044 824 - pseudogene predicted gene, 18898
Tssr113460 12 53149211 to 53149213 2 + TSS region transcription start site region 113460
Cpgi4599 12 53246501 to 53246652 151 CpG island CpG island 4599
Cpgi4600 12 53247764 to 53249122 1358 CpG island CpG island 4600
Tssr113461 12 53248217 to 53248240 23 + TSS region transcription start site region 113461
Tssr113462 12 53248399 to 53248421 22 + TSS region transcription start site region 113462
Tssr113463 12 53248423 to 53248474 51 + TSS region transcription start site region 113463
Npas3 12 53248677 to 54072175 823498 + protein coding gene neuronal PAS domain protein 3
Cpgi4601 12 53251872 to 53252036 164 CpG island CpG island 4601
Cpgi4602 12 53252326 to 53253738 1412 CpG island CpG island 4602
Tssr113464 12 53252609 to 53252649 40 + TSS region transcription start site region 113464
D12Mit65 12 53260239 to 53260397 158 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 65
Tssr3841 12 53284081 to 53284086 5 + TSS region transcription start site region 3841
1700030L22Rik 12 53303352 to 53309846 6494 - antisense lncRNA gene RIKEN cDNA 1700030L22 gene
Tssr116287 12 53309836 to 53309865 29 - TSS region transcription start site region 116287
D12Mit87 12 53592181 to 53592394 213 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 87