Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:52522288-53252475

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arhgap5 12 52503972 to 52571975 68003 + protein coding gene Rho GTPase activating protein 5
Tssr113443 12 52529442 to 52529446 4 + TSS region transcription start site region 113443
Tssr113444 12 52575407 to 52575408 1 + TSS region transcription start site region 113444
1700031P21Rik 12 52599984 to 52602322 2338 - lincRNA gene RIKEN cDNA 1700031P21 gene
Tssr116285 12 52602311 to 52602348 37 - TSS region transcription start site region 116285
Tssr116286 12 52602363 to 52602371 8 - TSS region transcription start site region 116286
Cpgi4596 12 52602974 to 52603793 819 CpG island CpG island 4596
Gm24859 12 52603788 to 52603894 106 + snRNA gene predicted gene, 24859
Gm23296 12 52604485 to 52604591 106 - snRNA gene predicted gene, 23296
Cpgi4597 12 52604641 to 52605035 394 CpG island CpG island 4597
Tssr113445 12 52607638 to 52607643 5 + TSS region transcription start site region 113445
Gm35239 12 52607670 to 52628812 21142 + lincRNA gene predicted gene, 35239
Tssr3840 12 52621691 to 52621692 1 - TSS region transcription start site region 3840
Tssr113446 12 52699233 to 52699242 9 + TSS region transcription start site region 113446
Tssr113447 12 52699297 to 52699411 114 + TSS region transcription start site region 113447
Akap6 12 52699383 to 53155599 456216 + protein coding gene A kinase (PRKA) anchor protein 6
Tssr113448 12 52746708 to 52746712 4 + TSS region transcription start site region 113448
Gm47488 12 52752700 to 52753108 408 - pseudogene predicted gene, 47488
Tssr113449 12 52773080 to 52773094 14 + TSS region transcription start site region 113449
Tssr113450 12 52783254 to 52783271 17 + TSS region transcription start site region 113450
Tssr113451 12 52783288 to 52783299 11 + TSS region transcription start site region 113451
Tssr113452 12 52790735 to 52790751 16 + TSS region transcription start site region 113452
Tssr113453 12 52790983 to 52791020 37 + TSS region transcription start site region 113453
Tssr113454 12 52818496 to 52818505 9 + TSS region transcription start site region 113454
Tssr113455 12 52818508 to 52818529 21 + TSS region transcription start site region 113455
Tssr113456 12 52829164 to 52829203 39 + TSS region transcription start site region 113456
Tssr113457 12 52854646 to 52854665 19 + TSS region transcription start site region 113457
Tssr113458 12 52854667 to 52854715 48 + TSS region transcription start site region 113458
Tssr113459 12 52854725 to 52854735 10 + TSS region transcription start site region 113459
Cpgi4598 12 52887288 to 52887475 187 CpG island CpG island 4598
D12Mit126 12 53028586 to 53028721 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 126
n-R5s58 12 53046708 to 53046826 118 - rRNA gene nuclear encoded rRNA 5S 58
Opfaq11 12 53108841 to 57229970 4121129 QTL open field activity QTL 11
Gm18898 12 53114220 to 53115044 824 - pseudogene predicted gene, 18898
Tssr113460 12 53149211 to 53149213 2 + TSS region transcription start site region 113460
Cpgi4599 12 53246501 to 53246652 151 CpG island CpG island 4599
Cpgi4600 12 53247764 to 53249122 1358 CpG island CpG island 4600
Tssr113461 12 53248217 to 53248240 23 + TSS region transcription start site region 113461
Tssr113462 12 53248399 to 53248421 22 + TSS region transcription start site region 113462
Tssr113463 12 53248423 to 53248474 51 + TSS region transcription start site region 113463
Npas3 12 53248677 to 54072175 823498 + protein coding gene neuronal PAS domain protein 3
Cpgi4601 12 53251872 to 53252036 164 CpG island CpG island 4601
Cpgi4602 12 53252326 to 53253738 1412 CpG island CpG island 4602