Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:51888423-54608474

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Heatr5a 12 51875871 to 51971321 95450 - protein coding gene HEAT repeat containing 5A
Gm26517 12 51888015 to 51889459 1444 + lincRNA gene predicted gene, 26517
Tssr116277 12 51925403 to 51925408 5 - TSS region transcription start site region 116277
Tssr116278 12 51925429 to 51925438 9 - TSS region transcription start site region 116278
Tssr116279 12 51939906 to 51939963 57 - TSS region transcription start site region 116279
Cpgi4592 12 51970809 to 51971515 706 CpG island CpG island 4592
C230081H03Rik 12 51970858 to 51972360 1502 unclassified non-coding RNA gene RIKEN cDNA C230081H03 gene
Tssr116280 12 51971250 to 51971284 34 - TSS region transcription start site region 116280
Tssr116281 12 51971289 to 51971326 37 - TSS region transcription start site region 116281
Dtd2 12 51988312 to 52006501 18189 - protein coding gene D-tyrosyl-tRNA deacylase 2
Tssr116282 12 51994092 to 51994093 1 - TSS region transcription start site region 116282
Gm47399 12 51995036 to 51995509 473 + pseudogene predicted gene, 47399
Cpgi4593 12 52006026 to 52006649 623 CpG island CpG island 4593
Tssr116283 12 52006490 to 52006512 22 - TSS region transcription start site region 116283
Gpr33 12 52023003 to 52028063 5060 - protein coding gene G protein-coupled receptor 33
Gm32220 12 52079014 to 52079311 297 + pseudogene predicted gene, 32220
Tssr113427 12 52079100 to 52079117 17 + TSS region transcription start site region 113427
Cpgi4594 12 52097621 to 52098017 396 CpG island CpG island 4594
Tssr113428 12 52097729 to 52097736 7 + TSS region transcription start site region 113428
Tssr113429 12 52097737 to 52097775 38 + TSS region transcription start site region 113429
Nubpl 12 52097746 to 52310970 213224 + protein coding gene nucleotide binding protein-like
Tssr113430 12 52216656 to 52216660 4 + TSS region transcription start site region 113430
Tssr113431 12 52265734 to 52265760 26 + TSS region transcription start site region 113431
Gm40423 12 52361367 to 52365362 3995 + lncRNA gene predicted gene, 40423
Tssr116284 12 52395285 to 52395321 36 - TSS region transcription start site region 116284
Gm47431 12 52401359 to 52448125 46766 - lincRNA gene predicted gene, 47431
Gm35071 12 52446384 to 52453891 7507 + lncRNA gene predicted gene, 35071
Tssr113432 12 52446884 to 52446907 23 + TSS region transcription start site region 113432
Gm35135 12 52475739 to 52480609 4870 - lincRNA gene predicted gene, 35135
Gm35188 12 52496360 to 52503689 7329 - lincRNA gene predicted gene, 35188
Cpgi4595 12 52503228 to 52505118 1890 CpG island CpG island 4595
Tssr113433 12 52503753 to 52503786 33 + TSS region transcription start site region 113433
Tssr113434 12 52503923 to 52503949 26 + TSS region transcription start site region 113434
Arhgap5 12 52503972 to 52571975 68003 + protein coding gene Rho GTPase activating protein 5
Tssr113435 12 52503992 to 52504028 36 + TSS region transcription start site region 113435
Tssr113436 12 52504035 to 52504051 16 + TSS region transcription start site region 113436
Tssr113437 12 52504063 to 52504093 30 + TSS region transcription start site region 113437
Tssr113438 12 52504097 to 52504114 17 + TSS region transcription start site region 113438
Tssr113439 12 52504246 to 52504285 39 + TSS region transcription start site region 113439
Tssr3839 12 52504309 to 52504318 9 + TSS region transcription start site region 3839
Tssr113440 12 52505141 to 52505145 4 + TSS region transcription start site region 113440
Tssr113441 12 52507271 to 52507274 3 + TSS region transcription start site region 113441
Tssr113442 12 52516266 to 52516281 15 + TSS region transcription start site region 113442
Tssr113443 12 52529442 to 52529446 4 + TSS region transcription start site region 113443
Tssr113444 12 52575407 to 52575408 1 + TSS region transcription start site region 113444
1700031P21Rik 12 52599984 to 52602322 2338 - lincRNA gene RIKEN cDNA 1700031P21 gene
Tssr116285 12 52602311 to 52602348 37 - TSS region transcription start site region 116285
Tssr116286 12 52602363 to 52602371 8 - TSS region transcription start site region 116286
Cpgi4596 12 52602974 to 52603793 819 CpG island CpG island 4596
Gm24859 12 52603788 to 52603894 106 + snRNA gene predicted gene, 24859
Gm23296 12 52604485 to 52604591 106 - snRNA gene predicted gene, 23296
Cpgi4597 12 52604641 to 52605035 394 CpG island CpG island 4597
Tssr113445 12 52607638 to 52607643 5 + TSS region transcription start site region 113445
Gm35239 12 52607670 to 52628812 21142 + lincRNA gene predicted gene, 35239
Tssr3840 12 52621691 to 52621692 1 - TSS region transcription start site region 3840
Tssr113446 12 52699233 to 52699242 9 + TSS region transcription start site region 113446
Tssr113447 12 52699297 to 52699411 114 + TSS region transcription start site region 113447
Akap6 12 52699383 to 53155599 456216 + protein coding gene A kinase (PRKA) anchor protein 6
Tssr113448 12 52746708 to 52746712 4 + TSS region transcription start site region 113448
Gm47488 12 52752700 to 52753108 408 - pseudogene predicted gene, 47488
Tssr113449 12 52773080 to 52773094 14 + TSS region transcription start site region 113449
Tssr113450 12 52783254 to 52783271 17 + TSS region transcription start site region 113450
Tssr113451 12 52783288 to 52783299 11 + TSS region transcription start site region 113451
Tssr113452 12 52790735 to 52790751 16 + TSS region transcription start site region 113452
Tssr113453 12 52790983 to 52791020 37 + TSS region transcription start site region 113453
Tssr113454 12 52818496 to 52818505 9 + TSS region transcription start site region 113454
Tssr113455 12 52818508 to 52818529 21 + TSS region transcription start site region 113455
Tssr113456 12 52829164 to 52829203 39 + TSS region transcription start site region 113456
Tssr113457 12 52854646 to 52854665 19 + TSS region transcription start site region 113457
Tssr113458 12 52854667 to 52854715 48 + TSS region transcription start site region 113458
Tssr113459 12 52854725 to 52854735 10 + TSS region transcription start site region 113459
Cpgi4598 12 52887288 to 52887475 187 CpG island CpG island 4598
D12Mit126 12 53028586 to 53028721 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 126
n-R5s58 12 53046708 to 53046826 118 - rRNA gene nuclear encoded rRNA 5S 58
Opfaq11 12 53108841 to 57229970 4121129 QTL open field activity QTL 11
Gm18898 12 53114220 to 53115044 824 - pseudogene predicted gene, 18898
Tssr113460 12 53149211 to 53149213 2 + TSS region transcription start site region 113460
Cpgi4599 12 53246501 to 53246652 151 CpG island CpG island 4599
Cpgi4600 12 53247764 to 53249122 1358 CpG island CpG island 4600
Tssr113461 12 53248217 to 53248240 23 + TSS region transcription start site region 113461
Tssr113462 12 53248399 to 53248421 22 + TSS region transcription start site region 113462
Tssr113463 12 53248423 to 53248474 51 + TSS region transcription start site region 113463
Npas3 12 53248677 to 54072175 823498 + protein coding gene neuronal PAS domain protein 3
Cpgi4601 12 53251872 to 53252036 164 CpG island CpG island 4601
Cpgi4602 12 53252326 to 53253738 1412 CpG island CpG island 4602
Tssr113464 12 53252609 to 53252649 40 + TSS region transcription start site region 113464
D12Mit65 12 53260239 to 53260397 158 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 65
Tssr3841 12 53284081 to 53284086 5 + TSS region transcription start site region 3841
1700030L22Rik 12 53303352 to 53309846 6494 - antisense lncRNA gene RIKEN cDNA 1700030L22 gene
Tssr116287 12 53309836 to 53309865 29 - TSS region transcription start site region 116287
D12Mit87 12 53592181 to 53592394 213 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 87
Tssr3842 12 53737716 to 53737753 37 + TSS region transcription start site region 3842
Tssr113465 12 53783605 to 53783609 4 + TSS region transcription start site region 113465
Gm35614 12 53834936 to 53846520 11584 + lncRNA gene predicted gene, 35614
Cpgi4603 12 53835905 to 53836352 447 CpG island CpG island 4603
Tssr113466 12 53838839 to 53838876 37 + TSS region transcription start site region 113466
D12Mit54 12 53859602 to 53859751 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 54
D12Mit189 12 53971829 to 53972026 197 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 189
Gm46308 12 54019760 to 54031370 11610 - lncRNA gene predicted gene, 46308
1700060O08Rik 12 54062048 to 54079392 17344 - antisense lncRNA gene RIKEN cDNA 1700060O08 gene
Cpgi4604 12 54067522 to 54069191 1669 CpG island CpG island 4604
Gm35818 12 54091430 to 54106885 15455 - lincRNA gene predicted gene, 35818
D12Mit199 12 54097932 to 54098096 164 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 199
Tssr113467 12 54135136 to 54135157 21 + TSS region transcription start site region 113467
Tssr113468 12 54135158 to 54135170 12 + TSS region transcription start site region 113468
Tssr116288 12 54141911 to 54141923 12 - TSS region transcription start site region 116288
Tssr3843 12 54141928 to 54141944 16 - TSS region transcription start site region 3843
Cpgi4605 12 54162778 to 54163158 380 CpG island CpG island 4605
Gm40424 12 54177087 to 54178963 1876 + lncRNA gene predicted gene, 40424
Egln3 12 54178981 to 54203860 24879 - protein coding gene egl-9 family hypoxia-inducible factor 3
Tssr116289 12 54179512 to 54179530 18 - TSS region transcription start site region 116289
Cpgi4606 12 54192001 to 54192153 152 CpG island CpG island 4606
Cpgi4607 12 54202893 to 54203933 1040 CpG island CpG island 4607
Tssr116290 12 54203273 to 54203297 24 - TSS region transcription start site region 116290
Tssr116291 12 54203794 to 54203811 17 - TSS region transcription start site region 116291
Tssr116292 12 54203822 to 54203838 16 - TSS region transcription start site region 116292
Tssr116293 12 54203844 to 54203857 13 - TSS region transcription start site region 116293
Tssr116294 12 54203861 to 54203887 26 - TSS region transcription start site region 116294
1700104L18Rik 12 54233615 to 54242320 8705 + lincRNA gene RIKEN cDNA 1700104L18 gene
Gm22220 12 54239238 to 54239386 148 + snRNA gene predicted gene, 22220
Tssr113469 12 54239238 to 54239245 7 + TSS region transcription start site region 113469
Gm24692 12 54240755 to 54240900 145 - snRNA gene predicted gene, 24692
Tssr116295 12 54289748 to 54289751 3 - TSS region transcription start site region 116295
D12Mit31 12 54310282 to 54310668 386 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 31
Cpgi4608 12 54313103 to 54313489 386 CpG island CpG island 4608
Gm47552 12 54316164 to 54317015 851 - lincRNA gene predicted gene, 47552
Tssr113470 12 54343701 to 54343716 15 + TSS region transcription start site region 113470
Tssr113471 12 54343717 to 54343731 14 + TSS region transcription start site region 113471
Tssr113472 12 54343734 to 54343745 11 + TSS region transcription start site region 113472
Tssr113473 12 54343746 to 54343765 19 + TSS region transcription start site region 113473
Gm35895 12 54350824 to 54353264 2440 + lncRNA gene predicted gene, 35895
D12Mit66 12 54351421 to 54351568 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 66
Tssr116296 12 54369305 to 54369355 50 - TSS region transcription start site region 116296
Tssr3844 12 54374353 to 54374358 5 + TSS region transcription start site region 3844
Gm7550 12 54388042 to 54391318 3276 - lincRNA gene predicted gene 7550
Gm46328 12 54400204 to 54405656 5452 + lincRNA gene predicted gene, 46328
Tssr113474 12 54428035 to 54428044 9 + TSS region transcription start site region 113474
Gm47553 12 54428077 to 54428556 479 + pseudogene predicted gene, 47553
Gm7557 12 54429534 to 54430398 864 - pseudogene predicted gene 7557
Tssr116297 12 54459472 to 54459478 6 - TSS region transcription start site region 116297
Gm36213 12 54463133 to 54479471 16338 - lncRNA gene predicted gene, 36213
Gm10465 12 54512421 to 54517079 4658 - lincRNA gene predicted gene 10465
Gm40425 12 54549885 to 54553804 3919 + lncRNA gene predicted gene, 40425
Tssr3845 12 54559233 to 54559246 13 + TSS region transcription start site region 3845