Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:51765734-52765760

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hectd1 12 51743722 to 51829536 85814 - protein coding gene HECT domain E3 ubiquitin protein ligase 1
Tssr116256 12 51773462 to 51773487 25 - TSS region transcription start site region 116256
Tssr116257 12 51773578 to 51773593 15 - TSS region transcription start site region 116257
Tssr113423 12 51797928 to 51797943 15 + TSS region transcription start site region 113423
Tssr116258 12 51800764 to 51800777 13 - TSS region transcription start site region 116258
Tssr116259 12 51802625 to 51802652 27 - TSS region transcription start site region 116259
Gm5785 12 51828185 to 51835675 7490 + protein coding gene predicted gene 5785
Cpgi4591 12 51828632 to 51830329 1697 CpG island CpG island 4591
Tssr116260 12 51829281 to 51829357 76 - TSS region transcription start site region 116260
Tssr113424 12 51829344 to 51829393 49 + TSS region transcription start site region 113424
Tssr116261 12 51829498 to 51829517 19 - TSS region transcription start site region 116261
Tssr116262 12 51829525 to 51829553 28 - TSS region transcription start site region 116262
Tssr116263 12 51829562 to 51829589 27 - TSS region transcription start site region 116263
Tssr116264 12 51829595 to 51829610 15 - TSS region transcription start site region 116264
Tssr116265 12 51829736 to 51829803 67 - TSS region transcription start site region 116265
Tssr116266 12 51829859 to 51829870 11 - TSS region transcription start site region 116266
Tssr116267 12 51830089 to 51830105 16 - TSS region transcription start site region 116267
Tssr116268 12 51830181 to 51830221 40 - TSS region transcription start site region 116268
Tssr113425 12 51838538 to 51838539 1 + TSS region transcription start site region 113425
Gm19309 12 51840417 to 51840621 204 - pseudogene predicted gene, 19309
Tssr116269 12 51840717 to 51840739 22 - TSS region transcription start site region 116269
Gm34894 12 51841639 to 51852653 11014 - lncRNA gene predicted gene, 34894
Tssr116270 12 51847844 to 51847852 8 - TSS region transcription start site region 116270
Tssr116271 12 51851735 to 51851746 11 - TSS region transcription start site region 116271
Tssr116272 12 51851767 to 51851783 16 - TSS region transcription start site region 116272
Tssr116273 12 51858328 to 51858348 20 - TSS region transcription start site region 116273
Tssr116274 12 51865870 to 51865883 13 - TSS region transcription start site region 116274
Tssr113426 12 51866122 to 51866130 8 + TSS region transcription start site region 113426
Tssr116275 12 51866402 to 51866417 15 - TSS region transcription start site region 116275
Tssr116276 12 51866426 to 51866445 19 - TSS region transcription start site region 116276
Heatr5a 12 51875871 to 51971321 95450 - protein coding gene HEAT repeat containing 5A
Dipa8 12 51887089 to 51887236 147 QTL drug induced psychomotor activation 8
D12Mit110 12 51887089 to 51887236 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 110
Gm26517 12 51888015 to 51889459 1444 + lincRNA gene predicted gene, 26517
Tssr116277 12 51925403 to 51925408 5 - TSS region transcription start site region 116277
Tssr116278 12 51925429 to 51925438 9 - TSS region transcription start site region 116278
Tssr116279 12 51939906 to 51939963 57 - TSS region transcription start site region 116279
Cpgi4592 12 51970809 to 51971515 706 CpG island CpG island 4592
C230081H03Rik 12 51970858 to 51972360 1502 unclassified non-coding RNA gene RIKEN cDNA C230081H03 gene
Tssr116280 12 51971250 to 51971284 34 - TSS region transcription start site region 116280
Tssr116281 12 51971289 to 51971326 37 - TSS region transcription start site region 116281
Dtd2 12 51988312 to 52006501 18189 - protein coding gene D-tyrosyl-tRNA deacylase 2
Tssr116282 12 51994092 to 51994093 1 - TSS region transcription start site region 116282
Gm47399 12 51995036 to 51995509 473 + pseudogene predicted gene, 47399
Cpgi4593 12 52006026 to 52006649 623 CpG island CpG island 4593
Tssr116283 12 52006490 to 52006512 22 - TSS region transcription start site region 116283
Gpr33 12 52023003 to 52028063 5060 - protein coding gene G protein-coupled receptor 33
Gm32220 12 52079014 to 52079311 297 + pseudogene predicted gene, 32220
Tssr113427 12 52079100 to 52079117 17 + TSS region transcription start site region 113427
Cpgi4594 12 52097621 to 52098017 396 CpG island CpG island 4594
Tssr113428 12 52097729 to 52097736 7 + TSS region transcription start site region 113428
Tssr113429 12 52097737 to 52097775 38 + TSS region transcription start site region 113429
Nubpl 12 52097746 to 52310970 213224 + protein coding gene nucleotide binding protein-like
Tssr113430 12 52216656 to 52216660 4 + TSS region transcription start site region 113430
Tssr113431 12 52265734 to 52265760 26 + TSS region transcription start site region 113431
Gm40423 12 52361367 to 52365362 3995 + lncRNA gene predicted gene, 40423
Tssr116284 12 52395285 to 52395321 36 - TSS region transcription start site region 116284
Gm47431 12 52401359 to 52448125 46766 - lincRNA gene predicted gene, 47431
Gm35071 12 52446384 to 52453891 7507 + lncRNA gene predicted gene, 35071
Tssr113432 12 52446884 to 52446907 23 + TSS region transcription start site region 113432
Gm35135 12 52475739 to 52480609 4870 - lincRNA gene predicted gene, 35135
Gm35188 12 52496360 to 52503689 7329 - lincRNA gene predicted gene, 35188
Cpgi4595 12 52503228 to 52505118 1890 CpG island CpG island 4595
Tssr113433 12 52503753 to 52503786 33 + TSS region transcription start site region 113433
Tssr113434 12 52503923 to 52503949 26 + TSS region transcription start site region 113434
Arhgap5 12 52503972 to 52571975 68003 + protein coding gene Rho GTPase activating protein 5
Tssr113435 12 52503992 to 52504028 36 + TSS region transcription start site region 113435
Tssr113436 12 52504035 to 52504051 16 + TSS region transcription start site region 113436
Tssr113437 12 52504063 to 52504093 30 + TSS region transcription start site region 113437
Tssr113438 12 52504097 to 52504114 17 + TSS region transcription start site region 113438
Tssr113439 12 52504246 to 52504285 39 + TSS region transcription start site region 113439
Tssr3839 12 52504309 to 52504318 9 + TSS region transcription start site region 3839
Tssr113440 12 52505141 to 52505145 4 + TSS region transcription start site region 113440
Tssr113441 12 52507271 to 52507274 3 + TSS region transcription start site region 113441
Tssr113442 12 52516266 to 52516281 15 + TSS region transcription start site region 113442
Tssr113443 12 52529442 to 52529446 4 + TSS region transcription start site region 113443
Tssr113444 12 52575407 to 52575408 1 + TSS region transcription start site region 113444
1700031P21Rik 12 52599984 to 52602322 2338 - lincRNA gene RIKEN cDNA 1700031P21 gene
Tssr116285 12 52602311 to 52602348 37 - TSS region transcription start site region 116285
Tssr116286 12 52602363 to 52602371 8 - TSS region transcription start site region 116286
Cpgi4596 12 52602974 to 52603793 819 CpG island CpG island 4596
Gm24859 12 52603788 to 52603894 106 + snRNA gene predicted gene, 24859
Gm23296 12 52604485 to 52604591 106 - snRNA gene predicted gene, 23296
Cpgi4597 12 52604641 to 52605035 394 CpG island CpG island 4597
Tssr113445 12 52607638 to 52607643 5 + TSS region transcription start site region 113445
Gm35239 12 52607670 to 52628812 21142 + lincRNA gene predicted gene, 35239
Tssr3840 12 52621691 to 52621692 1 - TSS region transcription start site region 3840
Tssr113446 12 52699233 to 52699242 9 + TSS region transcription start site region 113446
Tssr113447 12 52699297 to 52699411 114 + TSS region transcription start site region 113447
Akap6 12 52699383 to 53155599 456216 + protein coding gene A kinase (PRKA) anchor protein 6
Tssr113448 12 52746708 to 52746712 4 + TSS region transcription start site region 113448
Gm47488 12 52752700 to 52753108 408 - pseudogene predicted gene, 47488