Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:51300403-52550408

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4586 12 51347930 to 51348645 715 CpG island CpG island 4586
Tssr113411 12 51348019 to 51348040 21 + TSS region transcription start site region 113411
G2e3 12 51348230 to 51376986 28756 + protein coding gene G2/M-phase specific E3 ubiquitin ligase
Tssr113412 12 51348265 to 51348368 103 + TSS region transcription start site region 113412
Tssr113413 12 51348370 to 51348406 36 + TSS region transcription start site region 113413
Cpgi4587 12 51377343 to 51377726 383 CpG island CpG island 4587
Scfd1 12 51377513 to 51450102 72589 + protein coding gene Sec1 family domain containing 1
Tssr113414 12 51377546 to 51377557 11 + TSS region transcription start site region 113414
Tssr113415 12 51377560 to 51377587 27 + TSS region transcription start site region 113415
Tssr113416 12 51378286 to 51378294 8 + TSS region transcription start site region 113416
Gm40422 12 51389460 to 51411226 21766 - lncRNA gene predicted gene, 40422
Gm6147 12 51408696 to 51411024 2328 + pseudogene predicted gene 6147
Cpgi4588 12 51494553 to 51494890 337 CpG island CpG island 4588
Gm18503 12 51517272 to 51518031 759 + pseudogene predicted gene, 18503
Cpgi4589 12 51592942 to 51594372 1430 CpG island CpG island 4589
Tssr113417 12 51593315 to 51593357 42 + TSS region transcription start site region 113417
Coch 12 51593341 to 51605771 12430 + protein coding gene cochlin
Tssr113418 12 51593365 to 51593381 16 + TSS region transcription start site region 113418
Strn3 12 51609632 to 51691897 82265 - protein coding gene striatin, calmodulin binding protein 3
Tssr116242 12 51609717 to 51609743 26 - TSS region transcription start site region 116242
Tssr116243 12 51611604 to 51611606 2 - TSS region transcription start site region 116243
Tssr116244 12 51620647 to 51620657 10 - TSS region transcription start site region 116244
Tssr116245 12 51634919 to 51634922 3 - TSS region transcription start site region 116245
Tssr116246 12 51636664 to 51636669 5 - TSS region transcription start site region 116246
Tssr116247 12 51637311 to 51637315 4 - TSS region transcription start site region 116247
5730526G10Rik 12 51643886 to 51647521 3635 unclassified gene RIKEN cDNA 5730526G10 gene
Tssr116248 12 51673601 to 51673609 8 - TSS region transcription start site region 116248
Cpgi4590 12 51690788 to 51692555 1767 CpG island CpG island 4590
Ap4s1 12 51690928 to 51738939 48011 + protein coding gene adaptor-related protein complex AP-4, sigma 1
Tssr113419 12 51690992 to 51691039 47 + TSS region transcription start site region 113419
Tssr113420 12 51691125 to 51691140 15 + TSS region transcription start site region 113420
Tssr113421 12 51691200 to 51691232 32 + TSS region transcription start site region 113421
Tssr116249 12 51691707 to 51691712 5 - TSS region transcription start site region 116249
Tssr116250 12 51691883 to 51691925 42 - TSS region transcription start site region 116250
Tssr116251 12 51692004 to 51692009 5 - TSS region transcription start site region 116251
Tssr116252 12 51692013 to 51692026 13 - TSS region transcription start site region 116252
Tssr116253 12 51692051 to 51692058 7 - TSS region transcription start site region 116253
Tssr116254 12 51692075 to 51692092 17 - TSS region transcription start site region 116254
Tssr113422 12 51692644 to 51692646 2 + TSS region transcription start site region 113422
D12Mit237 12 51738999 to 51739298 299 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 237
Gm22663 12 51740241 to 51740342 101 - snRNA gene predicted gene, 22663
Hectd1 12 51743722 to 51829536 85814 - protein coding gene HECT domain E3 ubiquitin protein ligase 1
Tssr116255 12 51762101 to 51762105 4 - TSS region transcription start site region 116255
Tssr116256 12 51773462 to 51773487 25 - TSS region transcription start site region 116256
Tssr116257 12 51773578 to 51773593 15 - TSS region transcription start site region 116257
Tssr113423 12 51797928 to 51797943 15 + TSS region transcription start site region 113423
Tssr116258 12 51800764 to 51800777 13 - TSS region transcription start site region 116258
Tssr116259 12 51802625 to 51802652 27 - TSS region transcription start site region 116259
Gm5785 12 51828185 to 51835675 7490 + protein coding gene predicted gene 5785
Cpgi4591 12 51828632 to 51830329 1697 CpG island CpG island 4591
Tssr116260 12 51829281 to 51829357 76 - TSS region transcription start site region 116260
Tssr113424 12 51829344 to 51829393 49 + TSS region transcription start site region 113424
Tssr116261 12 51829498 to 51829517 19 - TSS region transcription start site region 116261
Tssr116262 12 51829525 to 51829553 28 - TSS region transcription start site region 116262
Tssr116263 12 51829562 to 51829589 27 - TSS region transcription start site region 116263
Tssr116264 12 51829595 to 51829610 15 - TSS region transcription start site region 116264
Tssr116265 12 51829736 to 51829803 67 - TSS region transcription start site region 116265
Tssr116266 12 51829859 to 51829870 11 - TSS region transcription start site region 116266
Tssr116267 12 51830089 to 51830105 16 - TSS region transcription start site region 116267
Tssr116268 12 51830181 to 51830221 40 - TSS region transcription start site region 116268
Tssr113425 12 51838538 to 51838539 1 + TSS region transcription start site region 113425
Gm19309 12 51840417 to 51840621 204 - pseudogene predicted gene, 19309
Tssr116269 12 51840717 to 51840739 22 - TSS region transcription start site region 116269
Gm34894 12 51841639 to 51852653 11014 - lncRNA gene predicted gene, 34894
Tssr116270 12 51847844 to 51847852 8 - TSS region transcription start site region 116270
Tssr116271 12 51851735 to 51851746 11 - TSS region transcription start site region 116271
Tssr116272 12 51851767 to 51851783 16 - TSS region transcription start site region 116272
Tssr116273 12 51858328 to 51858348 20 - TSS region transcription start site region 116273
Tssr116274 12 51865870 to 51865883 13 - TSS region transcription start site region 116274
Tssr113426 12 51866122 to 51866130 8 + TSS region transcription start site region 113426
Tssr116275 12 51866402 to 51866417 15 - TSS region transcription start site region 116275
Tssr116276 12 51866426 to 51866445 19 - TSS region transcription start site region 116276
Heatr5a 12 51875871 to 51971321 95450 - protein coding gene HEAT repeat containing 5A
Dipa8 12 51887089 to 51887236 147 QTL drug induced psychomotor activation 8
D12Mit110 12 51887089 to 51887236 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 110
Gm26517 12 51888015 to 51889459 1444 + lincRNA gene predicted gene, 26517
Tssr116277 12 51925403 to 51925408 5 - TSS region transcription start site region 116277
Tssr116278 12 51925429 to 51925438 9 - TSS region transcription start site region 116278
Tssr116279 12 51939906 to 51939963 57 - TSS region transcription start site region 116279
Cpgi4592 12 51970809 to 51971515 706 CpG island CpG island 4592
C230081H03Rik 12 51970858 to 51972360 1502 unclassified non-coding RNA gene RIKEN cDNA C230081H03 gene
Tssr116280 12 51971250 to 51971284 34 - TSS region transcription start site region 116280
Tssr116281 12 51971289 to 51971326 37 - TSS region transcription start site region 116281
Dtd2 12 51988312 to 52006501 18189 - protein coding gene D-tyrosyl-tRNA deacylase 2
Tssr116282 12 51994092 to 51994093 1 - TSS region transcription start site region 116282
Gm47399 12 51995036 to 51995509 473 + pseudogene predicted gene, 47399
Cpgi4593 12 52006026 to 52006649 623 CpG island CpG island 4593
Tssr116283 12 52006490 to 52006512 22 - TSS region transcription start site region 116283
Gpr33 12 52023003 to 52028063 5060 - protein coding gene G protein-coupled receptor 33
Gm32220 12 52079014 to 52079311 297 + pseudogene predicted gene, 32220
Tssr113427 12 52079100 to 52079117 17 + TSS region transcription start site region 113427
Cpgi4594 12 52097621 to 52098017 396 CpG island CpG island 4594
Tssr113428 12 52097729 to 52097736 7 + TSS region transcription start site region 113428
Tssr113429 12 52097737 to 52097775 38 + TSS region transcription start site region 113429
Nubpl 12 52097746 to 52310970 213224 + protein coding gene nucleotide binding protein-like
Tssr113430 12 52216656 to 52216660 4 + TSS region transcription start site region 113430
Tssr113431 12 52265734 to 52265760 26 + TSS region transcription start site region 113431
Gm40423 12 52361367 to 52365362 3995 + lncRNA gene predicted gene, 40423
Tssr116284 12 52395285 to 52395321 36 - TSS region transcription start site region 116284
Gm47431 12 52401359 to 52448125 46766 - lincRNA gene predicted gene, 47431
Gm35071 12 52446384 to 52453891 7507 + lncRNA gene predicted gene, 35071
Tssr113432 12 52446884 to 52446907 23 + TSS region transcription start site region 113432
Gm35135 12 52475739 to 52480609 4870 - lincRNA gene predicted gene, 35135
Gm35188 12 52496360 to 52503689 7329 - lincRNA gene predicted gene, 35188
Cpgi4595 12 52503228 to 52505118 1890 CpG island CpG island 4595
Tssr113433 12 52503753 to 52503786 33 + TSS region transcription start site region 113433
Tssr113434 12 52503923 to 52503949 26 + TSS region transcription start site region 113434
Arhgap5 12 52503972 to 52571975 68003 + protein coding gene Rho GTPase activating protein 5
Tssr113435 12 52503992 to 52504028 36 + TSS region transcription start site region 113435
Tssr113436 12 52504035 to 52504051 16 + TSS region transcription start site region 113436
Tssr113437 12 52504063 to 52504093 30 + TSS region transcription start site region 113437
Tssr113438 12 52504097 to 52504114 17 + TSS region transcription start site region 113438
Tssr113439 12 52504246 to 52504285 39 + TSS region transcription start site region 113439
Tssr3839 12 52504309 to 52504318 9 + TSS region transcription start site region 3839
Tssr113440 12 52505141 to 52505145 4 + TSS region transcription start site region 113440
Tssr113441 12 52507271 to 52507274 3 + TSS region transcription start site region 113441
Tssr113442 12 52516266 to 52516281 15 + TSS region transcription start site region 113442
Tssr113443 12 52529442 to 52529446 4 + TSS region transcription start site region 113443