Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:51295407-53855408

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rps11-ps4 12 51297487 to 51297960 473 + pseudogene ribosomal protein S11, pseudogene 4
Cpgi4586 12 51347930 to 51348645 715 CpG island CpG island 4586
Tssr113411 12 51348019 to 51348040 21 + TSS region transcription start site region 113411
G2e3 12 51348230 to 51376986 28756 + protein coding gene G2/M-phase specific E3 ubiquitin ligase
Tssr113412 12 51348265 to 51348368 103 + TSS region transcription start site region 113412
Tssr113413 12 51348370 to 51348406 36 + TSS region transcription start site region 113413
Cpgi4587 12 51377343 to 51377726 383 CpG island CpG island 4587
Scfd1 12 51377513 to 51450102 72589 + protein coding gene Sec1 family domain containing 1
Tssr113414 12 51377546 to 51377557 11 + TSS region transcription start site region 113414
Tssr113415 12 51377560 to 51377587 27 + TSS region transcription start site region 113415
Tssr113416 12 51378286 to 51378294 8 + TSS region transcription start site region 113416
Gm40422 12 51389460 to 51411226 21766 - lncRNA gene predicted gene, 40422
Gm6147 12 51408696 to 51411024 2328 + pseudogene predicted gene 6147
Cpgi4588 12 51494553 to 51494890 337 CpG island CpG island 4588
Gm18503 12 51517272 to 51518031 759 + pseudogene predicted gene, 18503
Cpgi4589 12 51592942 to 51594372 1430 CpG island CpG island 4589
Tssr113417 12 51593315 to 51593357 42 + TSS region transcription start site region 113417
Coch 12 51593341 to 51605771 12430 + protein coding gene cochlin
Tssr113418 12 51593365 to 51593381 16 + TSS region transcription start site region 113418
Strn3 12 51609632 to 51691897 82265 - protein coding gene striatin, calmodulin binding protein 3
Tssr116242 12 51609717 to 51609743 26 - TSS region transcription start site region 116242
Tssr116243 12 51611604 to 51611606 2 - TSS region transcription start site region 116243
Tssr116244 12 51620647 to 51620657 10 - TSS region transcription start site region 116244
Tssr116245 12 51634919 to 51634922 3 - TSS region transcription start site region 116245
Tssr116246 12 51636664 to 51636669 5 - TSS region transcription start site region 116246
Tssr116247 12 51637311 to 51637315 4 - TSS region transcription start site region 116247
5730526G10Rik 12 51643886 to 51647521 3635 unclassified gene RIKEN cDNA 5730526G10 gene
Tssr116248 12 51673601 to 51673609 8 - TSS region transcription start site region 116248
Cpgi4590 12 51690788 to 51692555 1767 CpG island CpG island 4590
Ap4s1 12 51690928 to 51738939 48011 + protein coding gene adaptor-related protein complex AP-4, sigma 1
Tssr113419 12 51690992 to 51691039 47 + TSS region transcription start site region 113419
Tssr113420 12 51691125 to 51691140 15 + TSS region transcription start site region 113420
Tssr113421 12 51691200 to 51691232 32 + TSS region transcription start site region 113421
Tssr116249 12 51691707 to 51691712 5 - TSS region transcription start site region 116249
Tssr116250 12 51691883 to 51691925 42 - TSS region transcription start site region 116250
Tssr116251 12 51692004 to 51692009 5 - TSS region transcription start site region 116251
Tssr116252 12 51692013 to 51692026 13 - TSS region transcription start site region 116252
Tssr116253 12 51692051 to 51692058 7 - TSS region transcription start site region 116253
Tssr116254 12 51692075 to 51692092 17 - TSS region transcription start site region 116254
Tssr113422 12 51692644 to 51692646 2 + TSS region transcription start site region 113422
D12Mit237 12 51738999 to 51739298 299 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 237
Gm22663 12 51740241 to 51740342 101 - snRNA gene predicted gene, 22663
Hectd1 12 51743722 to 51829536 85814 - protein coding gene HECT domain E3 ubiquitin protein ligase 1
Tssr116255 12 51762101 to 51762105 4 - TSS region transcription start site region 116255
Tssr116256 12 51773462 to 51773487 25 - TSS region transcription start site region 116256
Tssr116257 12 51773578 to 51773593 15 - TSS region transcription start site region 116257
Tssr113423 12 51797928 to 51797943 15 + TSS region transcription start site region 113423
Tssr116258 12 51800764 to 51800777 13 - TSS region transcription start site region 116258
Tssr116259 12 51802625 to 51802652 27 - TSS region transcription start site region 116259
Gm5785 12 51828185 to 51835675 7490 + protein coding gene predicted gene 5785
Cpgi4591 12 51828632 to 51830329 1697 CpG island CpG island 4591
Tssr116260 12 51829281 to 51829357 76 - TSS region transcription start site region 116260
Tssr113424 12 51829344 to 51829393 49 + TSS region transcription start site region 113424
Tssr116261 12 51829498 to 51829517 19 - TSS region transcription start site region 116261
Tssr116262 12 51829525 to 51829553 28 - TSS region transcription start site region 116262
Tssr116263 12 51829562 to 51829589 27 - TSS region transcription start site region 116263
Tssr116264 12 51829595 to 51829610 15 - TSS region transcription start site region 116264
Tssr116265 12 51829736 to 51829803 67 - TSS region transcription start site region 116265
Tssr116266 12 51829859 to 51829870 11 - TSS region transcription start site region 116266
Tssr116267 12 51830089 to 51830105 16 - TSS region transcription start site region 116267
Tssr116268 12 51830181 to 51830221 40 - TSS region transcription start site region 116268
Tssr113425 12 51838538 to 51838539 1 + TSS region transcription start site region 113425
Gm19309 12 51840417 to 51840621 204 - pseudogene predicted gene, 19309
Tssr116269 12 51840717 to 51840739 22 - TSS region transcription start site region 116269
Gm34894 12 51841639 to 51852653 11014 - lncRNA gene predicted gene, 34894
Tssr116270 12 51847844 to 51847852 8 - TSS region transcription start site region 116270
Tssr116271 12 51851735 to 51851746 11 - TSS region transcription start site region 116271
Tssr116272 12 51851767 to 51851783 16 - TSS region transcription start site region 116272
Tssr116273 12 51858328 to 51858348 20 - TSS region transcription start site region 116273
Tssr116274 12 51865870 to 51865883 13 - TSS region transcription start site region 116274
Tssr113426 12 51866122 to 51866130 8 + TSS region transcription start site region 113426
Tssr116275 12 51866402 to 51866417 15 - TSS region transcription start site region 116275
Tssr116276 12 51866426 to 51866445 19 - TSS region transcription start site region 116276
Heatr5a 12 51875871 to 51971321 95450 - protein coding gene HEAT repeat containing 5A
D12Mit110 12 51887089 to 51887236 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 110
Dipa8 12 51887089 to 51887236 147 QTL drug induced psychomotor activation 8
Gm26517 12 51888015 to 51889459 1444 + lincRNA gene predicted gene, 26517
Tssr116277 12 51925403 to 51925408 5 - TSS region transcription start site region 116277
Tssr116278 12 51925429 to 51925438 9 - TSS region transcription start site region 116278
Tssr116279 12 51939906 to 51939963 57 - TSS region transcription start site region 116279
Cpgi4592 12 51970809 to 51971515 706 CpG island CpG island 4592
C230081H03Rik 12 51970858 to 51972360 1502 unclassified non-coding RNA gene RIKEN cDNA C230081H03 gene
Tssr116280 12 51971250 to 51971284 34 - TSS region transcription start site region 116280
Tssr116281 12 51971289 to 51971326 37 - TSS region transcription start site region 116281
Dtd2 12 51988312 to 52006501 18189 - protein coding gene D-tyrosyl-tRNA deacylase 2
Tssr116282 12 51994092 to 51994093 1 - TSS region transcription start site region 116282
Gm47399 12 51995036 to 51995509 473 + pseudogene predicted gene, 47399
Cpgi4593 12 52006026 to 52006649 623 CpG island CpG island 4593
Tssr116283 12 52006490 to 52006512 22 - TSS region transcription start site region 116283
Gpr33 12 52023003 to 52028063 5060 - protein coding gene G protein-coupled receptor 33
Gm32220 12 52079014 to 52079311 297 + pseudogene predicted gene, 32220
Tssr113427 12 52079100 to 52079117 17 + TSS region transcription start site region 113427
Cpgi4594 12 52097621 to 52098017 396 CpG island CpG island 4594
Tssr113428 12 52097729 to 52097736 7 + TSS region transcription start site region 113428
Tssr113429 12 52097737 to 52097775 38 + TSS region transcription start site region 113429
Nubpl 12 52097746 to 52310970 213224 + protein coding gene nucleotide binding protein-like
Tssr113430 12 52216656 to 52216660 4 + TSS region transcription start site region 113430
Tssr113431 12 52265734 to 52265760 26 + TSS region transcription start site region 113431
Gm40423 12 52361367 to 52365362 3995 + lncRNA gene predicted gene, 40423
Tssr116284 12 52395285 to 52395321 36 - TSS region transcription start site region 116284
Gm47431 12 52401359 to 52448125 46766 - lincRNA gene predicted gene, 47431
Gm35071 12 52446384 to 52453891 7507 + lncRNA gene predicted gene, 35071
Tssr113432 12 52446884 to 52446907 23 + TSS region transcription start site region 113432
Gm35135 12 52475739 to 52480609 4870 - lincRNA gene predicted gene, 35135
Gm35188 12 52496360 to 52503689 7329 - lincRNA gene predicted gene, 35188
Cpgi4595 12 52503228 to 52505118 1890 CpG island CpG island 4595
Tssr113433 12 52503753 to 52503786 33 + TSS region transcription start site region 113433
Tssr113434 12 52503923 to 52503949 26 + TSS region transcription start site region 113434
Arhgap5 12 52503972 to 52571975 68003 + protein coding gene Rho GTPase activating protein 5
Tssr113435 12 52503992 to 52504028 36 + TSS region transcription start site region 113435
Tssr113436 12 52504035 to 52504051 16 + TSS region transcription start site region 113436
Tssr113437 12 52504063 to 52504093 30 + TSS region transcription start site region 113437
Tssr113438 12 52504097 to 52504114 17 + TSS region transcription start site region 113438
Tssr113439 12 52504246 to 52504285 39 + TSS region transcription start site region 113439
Tssr3839 12 52504309 to 52504318 9 + TSS region transcription start site region 3839
Tssr113440 12 52505141 to 52505145 4 + TSS region transcription start site region 113440
Tssr113441 12 52507271 to 52507274 3 + TSS region transcription start site region 113441
Tssr113442 12 52516266 to 52516281 15 + TSS region transcription start site region 113442
Tssr113443 12 52529442 to 52529446 4 + TSS region transcription start site region 113443
Tssr113444 12 52575407 to 52575408 1 + TSS region transcription start site region 113444
1700031P21Rik 12 52599984 to 52602322 2338 - lincRNA gene RIKEN cDNA 1700031P21 gene
Tssr116285 12 52602311 to 52602348 37 - TSS region transcription start site region 116285
Tssr116286 12 52602363 to 52602371 8 - TSS region transcription start site region 116286
Cpgi4596 12 52602974 to 52603793 819 CpG island CpG island 4596
Gm24859 12 52603788 to 52603894 106 + snRNA gene predicted gene, 24859
Gm23296 12 52604485 to 52604591 106 - snRNA gene predicted gene, 23296
Cpgi4597 12 52604641 to 52605035 394 CpG island CpG island 4597
Tssr113445 12 52607638 to 52607643 5 + TSS region transcription start site region 113445
Gm35239 12 52607670 to 52628812 21142 + lincRNA gene predicted gene, 35239
Tssr3840 12 52621691 to 52621692 1 - TSS region transcription start site region 3840
Tssr113446 12 52699233 to 52699242 9 + TSS region transcription start site region 113446
Tssr113447 12 52699297 to 52699411 114 + TSS region transcription start site region 113447
Akap6 12 52699383 to 53155599 456216 + protein coding gene A kinase (PRKA) anchor protein 6
Tssr113448 12 52746708 to 52746712 4 + TSS region transcription start site region 113448
Gm47488 12 52752700 to 52753108 408 - pseudogene predicted gene, 47488
Tssr113449 12 52773080 to 52773094 14 + TSS region transcription start site region 113449
Tssr113450 12 52783254 to 52783271 17 + TSS region transcription start site region 113450
Tssr113451 12 52783288 to 52783299 11 + TSS region transcription start site region 113451
Tssr113452 12 52790735 to 52790751 16 + TSS region transcription start site region 113452
Tssr113453 12 52790983 to 52791020 37 + TSS region transcription start site region 113453
Tssr113454 12 52818496 to 52818505 9 + TSS region transcription start site region 113454
Tssr113455 12 52818508 to 52818529 21 + TSS region transcription start site region 113455
Tssr113456 12 52829164 to 52829203 39 + TSS region transcription start site region 113456
Tssr113457 12 52854646 to 52854665 19 + TSS region transcription start site region 113457
Tssr113458 12 52854667 to 52854715 48 + TSS region transcription start site region 113458
Tssr113459 12 52854725 to 52854735 10 + TSS region transcription start site region 113459
Cpgi4598 12 52887288 to 52887475 187 CpG island CpG island 4598
D12Mit126 12 53028586 to 53028721 135 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 126
n-R5s58 12 53046708 to 53046826 118 - rRNA gene nuclear encoded rRNA 5S 58
Opfaq11 12 53108841 to 57229970 4121129 QTL open field activity QTL 11
Gm18898 12 53114220 to 53115044 824 - pseudogene predicted gene, 18898
Tssr113460 12 53149211 to 53149213 2 + TSS region transcription start site region 113460
Cpgi4599 12 53246501 to 53246652 151 CpG island CpG island 4599
Cpgi4600 12 53247764 to 53249122 1358 CpG island CpG island 4600
Tssr113461 12 53248217 to 53248240 23 + TSS region transcription start site region 113461
Tssr113462 12 53248399 to 53248421 22 + TSS region transcription start site region 113462
Tssr113463 12 53248423 to 53248474 51 + TSS region transcription start site region 113463
Npas3 12 53248677 to 54072175 823498 + protein coding gene neuronal PAS domain protein 3
Cpgi4601 12 53251872 to 53252036 164 CpG island CpG island 4601
Cpgi4602 12 53252326 to 53253738 1412 CpG island CpG island 4602
Tssr113464 12 53252609 to 53252649 40 + TSS region transcription start site region 113464
D12Mit65 12 53260239 to 53260397 158 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 65
Tssr3841 12 53284081 to 53284086 5 + TSS region transcription start site region 3841
1700030L22Rik 12 53303352 to 53309846 6494 - antisense lncRNA gene RIKEN cDNA 1700030L22 gene
Tssr116287 12 53309836 to 53309865 29 - TSS region transcription start site region 116287
D12Mit87 12 53592181 to 53592394 213 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 87
Tssr3842 12 53737716 to 53737753 37 + TSS region transcription start site region 3842
Tssr113465 12 53783605 to 53783609 4 + TSS region transcription start site region 113465
Gm35614 12 53834936 to 53846520 11584 + lncRNA gene predicted gene, 35614
Cpgi4603 12 53835905 to 53836352 447 CpG island CpG island 4603
Tssr113466 12 53838839 to 53838876 37 + TSS region transcription start site region 113466