Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:51294553-51694890

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rps11-ps4 12 51297487 to 51297960 473 + pseudogene ribosomal protein S11, pseudogene 4
Cpgi4586 12 51347930 to 51348645 715 CpG island CpG island 4586
Tssr113411 12 51348019 to 51348040 21 + TSS region transcription start site region 113411
G2e3 12 51348230 to 51376986 28756 + protein coding gene G2/M-phase specific E3 ubiquitin ligase
Tssr113412 12 51348265 to 51348368 103 + TSS region transcription start site region 113412
Tssr113413 12 51348370 to 51348406 36 + TSS region transcription start site region 113413
Cpgi4587 12 51377343 to 51377726 383 CpG island CpG island 4587
Scfd1 12 51377513 to 51450102 72589 + protein coding gene Sec1 family domain containing 1
Tssr113414 12 51377546 to 51377557 11 + TSS region transcription start site region 113414
Tssr113415 12 51377560 to 51377587 27 + TSS region transcription start site region 113415
Tssr113416 12 51378286 to 51378294 8 + TSS region transcription start site region 113416
Gm40422 12 51389460 to 51411226 21766 - lncRNA gene predicted gene, 40422
Gm6147 12 51408696 to 51411024 2328 + pseudogene predicted gene 6147
Cpgi4588 12 51494553 to 51494890 337 CpG island CpG island 4588
Gm18503 12 51517272 to 51518031 759 + pseudogene predicted gene, 18503
Cpgi4589 12 51592942 to 51594372 1430 CpG island CpG island 4589
Tssr113417 12 51593315 to 51593357 42 + TSS region transcription start site region 113417
Coch 12 51593341 to 51605771 12430 + protein coding gene cochlin
Tssr113418 12 51593365 to 51593381 16 + TSS region transcription start site region 113418
Strn3 12 51609632 to 51691897 82265 - protein coding gene striatin, calmodulin binding protein 3
Tssr116242 12 51609717 to 51609743 26 - TSS region transcription start site region 116242
Tssr116243 12 51611604 to 51611606 2 - TSS region transcription start site region 116243
Tssr116244 12 51620647 to 51620657 10 - TSS region transcription start site region 116244
Tssr116245 12 51634919 to 51634922 3 - TSS region transcription start site region 116245
Tssr116246 12 51636664 to 51636669 5 - TSS region transcription start site region 116246
Tssr116247 12 51637311 to 51637315 4 - TSS region transcription start site region 116247
5730526G10Rik 12 51643886 to 51647521 3635 unclassified gene RIKEN cDNA 5730526G10 gene
Tssr116248 12 51673601 to 51673609 8 - TSS region transcription start site region 116248
Cpgi4590 12 51690788 to 51692555 1767 CpG island CpG island 4590
Ap4s1 12 51690928 to 51738939 48011 + protein coding gene adaptor-related protein complex AP-4, sigma 1
Tssr113419 12 51690992 to 51691039 47 + TSS region transcription start site region 113419
Tssr113420 12 51691125 to 51691140 15 + TSS region transcription start site region 113420
Tssr113421 12 51691200 to 51691232 32 + TSS region transcription start site region 113421
Tssr116249 12 51691707 to 51691712 5 - TSS region transcription start site region 116249
Tssr116250 12 51691883 to 51691925 42 - TSS region transcription start site region 116250
Tssr116251 12 51692004 to 51692009 5 - TSS region transcription start site region 116251
Tssr116252 12 51692013 to 51692026 13 - TSS region transcription start site region 116252
Tssr116253 12 51692051 to 51692058 7 - TSS region transcription start site region 116253
Tssr116254 12 51692075 to 51692092 17 - TSS region transcription start site region 116254
Tssr113422 12 51692644 to 51692646 2 + TSS region transcription start site region 113422