Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:50522724-51342728

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23 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkd1 12 50341231 to 50649098 307867 - protein coding gene protein kinase D1
C130009A20Rik 12 50622618 to 50631833 9215 unclassified non-coding RNA gene RIKEN cDNA C130009A20 gene
Gm10468 12 50623539 to 50626809 3270 unclassified gene predicted gene 10468
Cpgi4585 12 50648396 to 50649594 1198 CpG island CpG island 4585
Tssr116236 12 50649190 to 50649281 91 - TSS region transcription start site region 116236
Gm48779 12 50753097 to 50900985 147888 + lincRNA gene predicted gene, 48779
D12Mit127 12 50813018 to 50813147 129 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 127
Gm48777 12 50895099 to 50895471 372 - pseudogene predicted gene, 48777
Tssr116237 12 50932724 to 50932728 4 - TSS region transcription start site region 116237
Gm34581 12 50980713 to 50990817 10104 + lncRNA gene predicted gene, 34581
Gm40421 12 50985288 to 50987814 2526 - lincRNA gene predicted gene, 40421
1700008C04Rik 12 51005158 to 51062543 57385 + lincRNA gene RIKEN cDNA 1700008C04 gene
Tssr116238 12 51030141 to 51030146 5 - TSS region transcription start site region 116238
Tssr116239 12 51030176 to 51030184 8 - TSS region transcription start site region 116239
Gm22088 12 51085687 to 51085803 116 + snoRNA gene predicted gene, 22088
D12Mit188 12 51120076 to 51120201 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 188
Gm34745 12 51126884 to 51157113 30229 - lncRNA gene predicted gene, 34745
Gm7172 12 51133551 to 51134702 1151 - pseudogene predicted gene 7172
Tssr116240 12 51134905 to 51134925 20 - TSS region transcription start site region 116240
Tssr116241 12 51134990 to 51134991 1 - TSS region transcription start site region 116241
D12Mit86.2 12 51281600 to 51281725 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 86.2
D12Mit86 12 51281700 to 51281842 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 86
Rps11-ps4 12 51297487 to 51297960 473 + pseudogene ribosomal protein S11, pseudogene 4