Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:50440687-51730803

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkd1 12 50341231 to 50649098 307867 - protein coding gene protein kinase D1
D12Mit64 12 50458226 to 50458363 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 64
C130009A20Rik 12 50622618 to 50631833 9215 unclassified non-coding RNA gene RIKEN cDNA C130009A20 gene
Gm10468 12 50623539 to 50626809 3270 unclassified gene predicted gene 10468
Cpgi4585 12 50648396 to 50649594 1198 CpG island CpG island 4585
Tssr116236 12 50649190 to 50649281 91 - TSS region transcription start site region 116236
Gm48779 12 50753097 to 50900985 147888 + lincRNA gene predicted gene, 48779
D12Mit127 12 50813018 to 50813147 129 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 127
Gm48777 12 50895099 to 50895471 372 - pseudogene predicted gene, 48777
Tssr116237 12 50932724 to 50932728 4 - TSS region transcription start site region 116237
Gm34581 12 50980713 to 50990817 10104 + lncRNA gene predicted gene, 34581
Gm40421 12 50985288 to 50987814 2526 - lincRNA gene predicted gene, 40421
1700008C04Rik 12 51005158 to 51062543 57385 + lincRNA gene RIKEN cDNA 1700008C04 gene
Tssr116238 12 51030141 to 51030146 5 - TSS region transcription start site region 116238
Tssr116239 12 51030176 to 51030184 8 - TSS region transcription start site region 116239
Gm22088 12 51085687 to 51085803 116 + snoRNA gene predicted gene, 22088
D12Mit188 12 51120076 to 51120201 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 188
Gm34745 12 51126884 to 51157113 30229 - lncRNA gene predicted gene, 34745
Gm7172 12 51133551 to 51134702 1151 - pseudogene predicted gene 7172
Tssr116240 12 51134905 to 51134925 20 - TSS region transcription start site region 116240
Tssr116241 12 51134990 to 51134991 1 - TSS region transcription start site region 116241
D12Mit86.2 12 51281600 to 51281725 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 86.2
D12Mit86 12 51281700 to 51281842 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 86
Rps11-ps4 12 51297487 to 51297960 473 + pseudogene ribosomal protein S11, pseudogene 4
Cpgi4586 12 51347930 to 51348645 715 CpG island CpG island 4586
Tssr113411 12 51348019 to 51348040 21 + TSS region transcription start site region 113411
G2e3 12 51348230 to 51376986 28756 + protein coding gene G2/M-phase specific E3 ubiquitin ligase
Tssr113412 12 51348265 to 51348368 103 + TSS region transcription start site region 113412
Tssr113413 12 51348370 to 51348406 36 + TSS region transcription start site region 113413
Cpgi4587 12 51377343 to 51377726 383 CpG island CpG island 4587
Scfd1 12 51377513 to 51450102 72589 + protein coding gene Sec1 family domain containing 1
Tssr113414 12 51377546 to 51377557 11 + TSS region transcription start site region 113414
Tssr113415 12 51377560 to 51377587 27 + TSS region transcription start site region 113415
Tssr113416 12 51378286 to 51378294 8 + TSS region transcription start site region 113416
Gm40422 12 51389460 to 51411226 21766 - lncRNA gene predicted gene, 40422
Gm6147 12 51408696 to 51411024 2328 + pseudogene predicted gene 6147
Cpgi4588 12 51494553 to 51494890 337 CpG island CpG island 4588
Gm18503 12 51517272 to 51518031 759 + pseudogene predicted gene, 18503
Cpgi4589 12 51592942 to 51594372 1430 CpG island CpG island 4589
Tssr113417 12 51593315 to 51593357 42 + TSS region transcription start site region 113417
Coch 12 51593341 to 51605771 12430 + protein coding gene cochlin
Tssr113418 12 51593365 to 51593381 16 + TSS region transcription start site region 113418
Strn3 12 51609632 to 51691897 82265 - protein coding gene striatin, calmodulin binding protein 3
Tssr116242 12 51609717 to 51609743 26 - TSS region transcription start site region 116242
Tssr116243 12 51611604 to 51611606 2 - TSS region transcription start site region 116243
Tssr116244 12 51620647 to 51620657 10 - TSS region transcription start site region 116244
Tssr116245 12 51634919 to 51634922 3 - TSS region transcription start site region 116245
Tssr116246 12 51636664 to 51636669 5 - TSS region transcription start site region 116246
Tssr116247 12 51637311 to 51637315 4 - TSS region transcription start site region 116247
5730526G10Rik 12 51643886 to 51647521 3635 unclassified gene RIKEN cDNA 5730526G10 gene
Tssr116248 12 51673601 to 51673609 8 - TSS region transcription start site region 116248
Cpgi4590 12 51690788 to 51692555 1767 CpG island CpG island 4590
Ap4s1 12 51690928 to 51738939 48011 + protein coding gene adaptor-related protein complex AP-4, sigma 1
Tssr113419 12 51690992 to 51691039 47 + TSS region transcription start site region 113419
Tssr113420 12 51691125 to 51691140 15 + TSS region transcription start site region 113420
Tssr113421 12 51691200 to 51691232 32 + TSS region transcription start site region 113421
Tssr116249 12 51691707 to 51691712 5 - TSS region transcription start site region 116249
Tssr116250 12 51691883 to 51691925 42 - TSS region transcription start site region 116250
Tssr116251 12 51692004 to 51692009 5 - TSS region transcription start site region 116251
Tssr116252 12 51692013 to 51692026 13 - TSS region transcription start site region 116252
Tssr116253 12 51692051 to 51692058 7 - TSS region transcription start site region 116253
Tssr116254 12 51692075 to 51692092 17 - TSS region transcription start site region 116254
Tssr113422 12 51692644 to 51692646 2 + TSS region transcription start site region 113422