Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:4879452-5999569

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubxn2a 12 4879032 to 4907705 28673 - protein coding gene UBX domain protein 2A
Cpgi4386 12 4906930 to 4907932 1002 CpG island CpG island 4386
Tssr115656 12 4907229 to 4907257 28 - TSS region transcription start site region 115656
Tssr115657 12 4907393 to 4907402 9 - TSS region transcription start site region 115657
Tssr115658 12 4907474 to 4907533 59 - TSS region transcription start site region 115658
Tssr115659 12 4907538 to 4907558 20 - TSS region transcription start site region 115659
Tssr115660 12 4907566 to 4907584 18 - TSS region transcription start site region 115660
Tssr115661 12 4907600 to 4907609 9 - TSS region transcription start site region 115661
Tssr115662 12 4907739 to 4907754 15 - TSS region transcription start site region 115662
Tssr112590 12 4907810 to 4907824 14 + TSS region transcription start site region 112590
Tssr115663 12 4910489 to 4910495 6 - TSS region transcription start site region 115663
Tssr115664 12 4916133 to 4916140 7 - TSS region transcription start site region 115664
Tssr115665 12 4916177 to 4916184 7 - TSS region transcription start site region 115665
Tssr115666 12 4916198 to 4916220 22 - TSS region transcription start site region 115666
Tssr115667 12 4916537 to 4916552 15 - TSS region transcription start site region 115667
Tssr115668 12 4916688 to 4916729 41 - TSS region transcription start site region 115668
Cpgi4387 12 4916898 to 4918241 1343 CpG island CpG island 4387
Tssr115669 12 4917006 to 4917015 9 - TSS region transcription start site region 115669
Tssr112591 12 4917300 to 4917307 7 + TSS region transcription start site region 112591
Tssr112592 12 4917332 to 4917343 11 + TSS region transcription start site region 112592
Tssr112593 12 4917346 to 4917370 24 + TSS region transcription start site region 112593
Atad2b 12 4917353 to 5047394 130041 + protein coding gene ATPase family, AAA domain containing 2B
Tssr112594 12 4917376 to 4917438 62 + TSS region transcription start site region 112594
Tssr115670 12 4918102 to 4918107 5 - TSS region transcription start site region 115670
Tssr115671 12 4918139 to 4918150 11 - TSS region transcription start site region 115671
Tssr115672 12 4918163 to 4918182 19 - TSS region transcription start site region 115672
Tssr115673 12 4918186 to 4918196 10 - TSS region transcription start site region 115673
Tssr115674 12 4918230 to 4918249 19 - TSS region transcription start site region 115674
Tssr115675 12 4918273 to 4918284 11 - TSS region transcription start site region 115675
Tssr112595 12 4944912 to 4944933 21 + TSS region transcription start site region 112595
Tssr112596 12 4956669 to 4956673 4 + TSS region transcription start site region 112596
Tssr115676 12 4996803 to 4996809 6 - TSS region transcription start site region 115676
Gm23167 12 4999266 to 4999368 102 - snRNA gene predicted gene, 23167
Gm9110 12 5066832 to 5067448 616 - pseudogene predicted gene 9110
Klhl29 12 5077472 to 5375682 298210 - protein coding gene kelch-like 29
D12Mit135 12 5099373 to 5099492 119 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 135
Tssr115677 12 5201121 to 5201123 2 - TSS region transcription start site region 115677
Gm48532 12 5235156 to 5235964 808 - unclassified gene predicted gene, 48532
Tssr115678 12 5246840 to 5246870 30 - TSS region transcription start site region 115678
D12Mit264 12 5305176 to 5305297 121 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 264
Tssr115679 12 5334637 to 5334641 4 - TSS region transcription start site region 115679
Tssr115680 12 5367918 to 5367921 3 - TSS region transcription start site region 115680
Tbbr2 12 5368440 to 5368579 139 QTL Trypanosoma brucei brucei response 2
Lmr22 12 5368440 to 5368579 139 QTL leishmaniasis resistance 22
Skull17 12 5368440 to 5368579 139 QTL skull morphology 17
Dyscalc3 12 5368440 to 5368579 139 QTL dystrophic cardiac calcinosis 3
Tmc1m3 12 5368440 to 76984429 71615989 QTL Tmc1 modifier 3
D12Mit37 12 5368440 to 5368579 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 37
Cpgi4388 12 5373589 to 5376444 2855 CpG island CpG island 4388
Tssr115681 12 5375688 to 5375705 17 - TSS region transcription start site region 115681
Tssr115682 12 5375711 to 5375735 24 - TSS region transcription start site region 115682
Cpgi4389 12 5410489 to 5410674 185 CpG island CpG island 4389
2810032G03Rik 12 5414886 to 5416132 1246 + lincRNA gene RIKEN cDNA 2810032G03 gene
D12Mit266 12 5439452 to 5439569 117 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 266
Gm32214 12 5441537 to 5445460 3923 + lncRNA gene predicted gene, 32214
Tssr115683 12 5491446 to 5491449 3 - TSS region transcription start site region 115683
Gm32258 12 5559593 to 5583458 23865 + lncRNA gene predicted gene, 32258
Gm5652 12 5589617 to 5590624 1007 - pseudogene predicted gene 5652
Gm48599 12 5591204 to 5591532 328 - pseudogene predicted gene, 48599
Gm32398 12 5603742 to 5685123 81381 + lncRNA gene predicted gene, 32398
Gm40238 12 5640573 to 5643377 2804 + pseudogene predicted gene, 40238
Tssr112597 12 5642998 to 5643001 3 + TSS region transcription start site region 112597
Tssr112598 12 5643047 to 5643071 24 + TSS region transcription start site region 112598
Tssr112599 12 5643128 to 5643153 25 + TSS region transcription start site region 112599
Gm9548 12 5740550 to 5985540 244990 + lncRNA gene predicted gene 9548
Gm32442 12 5807271 to 5856147 48876 + lincRNA gene predicted gene, 32442
Tssr112600 12 5808193 to 5808200 7 + TSS region transcription start site region 112600
Tssr112601 12 5808264 to 5808304 40 + TSS region transcription start site region 112601
Gm23752 12 5843712 to 5843826 114 + rRNA gene predicted gene, 23752
Gm46333 12 5847755 to 5849569 1814 + lncRNA gene predicted gene, 46333
Tssr3770 12 5892048 to 5892067 19 + TSS region transcription start site region 3770
Tssr3771 12 5892069 to 5892084 15 + TSS region transcription start site region 3771
Tssr112602 12 5896588 to 5896593 5 + TSS region transcription start site region 112602
4930404K06Rik 12 5927027 to 5943631 16604 unclassified gene RIKEN cDNA 4930404K06 gene
Tssr115684 12 5943595 to 5943621 26 - TSS region transcription start site region 115684
D12Mit103 12 5956981 to 5957112 131 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 103
D12Mit1009 12 5956997 to 5957131 134 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1009