Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:48575099-53215471

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29818 12 48632293 to 48632457 164 + pseudogene predicted gene, 29818
Olfr1400-ps1 12 48903851 to 48904550 699 - pseudogene olfactory receptor 1400, pseudogene 1
Olfr1399-ps1 12 48905578 to 48905990 412 - pseudogene olfactory receptor 1399, pseudogene 1
Gm26454 12 49009883 to 49009989 106 + snRNA gene predicted gene, 26454
Gm7456 12 49140256 to 49141266 1010 + pseudogene predicted gene 7456
Gm18623 12 49324737 to 49325615 878 + pseudogene predicted gene, 18623
Gm34304 12 49368729 to 49381885 13156 - lincRNA gene predicted gene, 34304
Tssr113386 12 49377657 to 49377672 15 + TSS region transcription start site region 113386
Tssr113387 12 49377768 to 49377785 17 + TSS region transcription start site region 113387
Tssr113388 12 49377821 to 49377851 30 + TSS region transcription start site region 113388
Tssr116231 12 49381824 to 49381830 6 - TSS region transcription start site region 116231
Tssr113389 12 49381974 to 49381995 21 + TSS region transcription start site region 113389
Tssr113390 12 49382057 to 49382078 21 + TSS region transcription start site region 113390
Tssr113391 12 49382652 to 49382667 15 + TSS region transcription start site region 113391
Tssr113392 12 49382676 to 49382691 15 + TSS region transcription start site region 113392
Tssr113393 12 49382791 to 49382802 11 + TSS region transcription start site region 113393
Foxg1 12 49382883 to 49386867 3984 + protein coding gene forkhead box G1
Cpgi4581 12 49382961 to 49385884 2923 CpG island CpG island 4581
Tssr113394 12 49383085 to 49383105 20 + TSS region transcription start site region 113394
Tssr113395 12 49383917 to 49383963 46 + TSS region transcription start site region 113395
Tssr113396 12 49384125 to 49384157 32 + TSS region transcription start site region 113396
Tssr113397 12 49384258 to 49384282 24 + TSS region transcription start site region 113397
Tssr113398 12 49384287 to 49384316 29 + TSS region transcription start site region 113398
Tssr3838 12 49384332 to 49384343 11 + TSS region transcription start site region 3838
Tssr113399 12 49384356 to 49384365 9 + TSS region transcription start site region 113399
Tssr113400 12 49384366 to 49384398 32 + TSS region transcription start site region 113400
Tssr113401 12 49384510 to 49384523 13 + TSS region transcription start site region 113401
Tssr113402 12 49384560 to 49384580 20 + TSS region transcription start site region 113402
Tssr113403 12 49384935 to 49384946 11 + TSS region transcription start site region 113403
Tssr113404 12 49384961 to 49384972 11 + TSS region transcription start site region 113404
Tssr113405 12 49384986 to 49385028 42 + TSS region transcription start site region 113405
Gm43517 12 49385174 to 49394127 8953 + protein coding gene predicted gene 43517
Tssr113406 12 49385189 to 49385199 10 + TSS region transcription start site region 113406
Tssr113407 12 49385444 to 49385463 19 + TSS region transcription start site region 113407
Tssr113408 12 49385652 to 49385658 6 + TSS region transcription start site region 113408
3110039M20Rik 12 49389652 to 49407346 17694 + lincRNA gene RIKEN cDNA 3110039M20 gene
Tssr113409 12 49389859 to 49389894 35 + TSS region transcription start site region 113409
Cpgi4582 12 49391252 to 49392143 891 CpG island CpG island 4582
Cpgi4583 12 49394936 to 49395142 206 CpG island CpG island 4583
Cpgi4584 12 49401024 to 49401976 952 CpG island CpG island 4584
Gm48659 12 49411814 to 49412248 434 - pseudogene predicted gene, 48659
Gm34381 12 49452793 to 49476037 23244 + lncRNA gene predicted gene, 34381
1810007C17Rik 12 49476993 to 49480862 3869 - lincRNA gene RIKEN cDNA 1810007C17 gene
Gm19599 12 49499008 to 49499365 357 + pseudogene predicted gene, 19599
Gm25015 12 49578456 to 49578583 127 - snoRNA gene predicted gene, 25015
Gm7476 12 49776115 to 49776775 660 - pseudogene predicted gene 7476
Tssr116232 12 49776819 to 49776820 1 - TSS region transcription start site region 116232
Gm7481 12 49840757 to 49841751 994 - pseudogene predicted gene 7481
Tssr116233 12 49841822 to 49841824 2 - TSS region transcription start site region 116233
Tssr113410 12 49949201 to 49949218 17 + TSS region transcription start site region 113410
Gm40419 12 50017406 to 50123358 105952 - lncRNA gene predicted gene, 40419
Gm40418 12 50120309 to 50145236 24927 + lincRNA gene predicted gene, 40418
Gm34523 12 50198069 to 50222058 23989 - lncRNA gene predicted gene, 34523
Prkd1 12 50341231 to 50649098 307867 - protein coding gene protein kinase D1
Tssr116234 12 50356031 to 50356034 3 - TSS region transcription start site region 116234
Tssr116235 12 50411424 to 50411429 5 - TSS region transcription start site region 116235
D12Mit64 12 50458226 to 50458363 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 64
C130009A20Rik 12 50622618 to 50631833 9215 unclassified non-coding RNA gene RIKEN cDNA C130009A20 gene
Gm10468 12 50623539 to 50626809 3270 unclassified gene predicted gene 10468
Cpgi4585 12 50648396 to 50649594 1198 CpG island CpG island 4585
Tssr116236 12 50649190 to 50649281 91 - TSS region transcription start site region 116236
Gm48779 12 50753097 to 50900985 147888 + lincRNA gene predicted gene, 48779
D12Mit127 12 50813018 to 50813147 129 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 127
Gm48777 12 50895099 to 50895471 372 - pseudogene predicted gene, 48777
Tssr116237 12 50932724 to 50932728 4 - TSS region transcription start site region 116237
Gm34581 12 50980713 to 50990817 10104 + lncRNA gene predicted gene, 34581
Gm40421 12 50985288 to 50987814 2526 - lincRNA gene predicted gene, 40421
1700008C04Rik 12 51005158 to 51062543 57385 + lincRNA gene RIKEN cDNA 1700008C04 gene
Tssr116238 12 51030141 to 51030146 5 - TSS region transcription start site region 116238
Tssr116239 12 51030176 to 51030184 8 - TSS region transcription start site region 116239
Gm22088 12 51085687 to 51085803 116 + snoRNA gene predicted gene, 22088
D12Mit188 12 51120076 to 51120201 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 188
Gm34745 12 51126884 to 51157113 30229 - lncRNA gene predicted gene, 34745
Gm7172 12 51133551 to 51134702 1151 - pseudogene predicted gene 7172
Tssr116240 12 51134905 to 51134925 20 - TSS region transcription start site region 116240
Tssr116241 12 51134990 to 51134991 1 - TSS region transcription start site region 116241
D12Mit86.2 12 51281600 to 51281725 125 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 86.2
D12Mit86 12 51281700 to 51281842 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 86
Rps11-ps4 12 51297487 to 51297960 473 + pseudogene ribosomal protein S11, pseudogene 4
Cpgi4586 12 51347930 to 51348645 715 CpG island CpG island 4586
Tssr113411 12 51348019 to 51348040 21 + TSS region transcription start site region 113411
G2e3 12 51348230 to 51376986 28756 + protein coding gene G2/M-phase specific E3 ubiquitin ligase
Tssr113412 12 51348265 to 51348368 103 + TSS region transcription start site region 113412
Tssr113413 12 51348370 to 51348406 36 + TSS region transcription start site region 113413
Cpgi4587 12 51377343 to 51377726 383 CpG island CpG island 4587
Scfd1 12 51377513 to 51450102 72589 + protein coding gene Sec1 family domain containing 1
Tssr113414 12 51377546 to 51377557 11 + TSS region transcription start site region 113414
Tssr113415 12 51377560 to 51377587 27 + TSS region transcription start site region 113415
Tssr113416 12 51378286 to 51378294 8 + TSS region transcription start site region 113416
Gm40422 12 51389460 to 51411226 21766 - lncRNA gene predicted gene, 40422
Gm6147 12 51408696 to 51411024 2328 + pseudogene predicted gene 6147
Cpgi4588 12 51494553 to 51494890 337 CpG island CpG island 4588
Gm18503 12 51517272 to 51518031 759 + pseudogene predicted gene, 18503
Cpgi4589 12 51592942 to 51594372 1430 CpG island CpG island 4589
Tssr113417 12 51593315 to 51593357 42 + TSS region transcription start site region 113417
Coch 12 51593341 to 51605771 12430 + protein coding gene cochlin
Tssr113418 12 51593365 to 51593381 16 + TSS region transcription start site region 113418
Strn3 12 51609632 to 51691897 82265 - protein coding gene striatin, calmodulin binding protein 3
Tssr116242 12 51609717 to 51609743 26 - TSS region transcription start site region 116242
Tssr116243 12 51611604 to 51611606 2 - TSS region transcription start site region 116243
Tssr116244 12 51620647 to 51620657 10 - TSS region transcription start site region 116244
Tssr116245 12 51634919 to 51634922 3 - TSS region transcription start site region 116245
Tssr116246 12 51636664 to 51636669 5 - TSS region transcription start site region 116246
Tssr116247 12 51637311 to 51637315 4 - TSS region transcription start site region 116247
5730526G10Rik 12 51643886 to 51647521 3635 unclassified gene RIKEN cDNA 5730526G10 gene
Tssr116248 12 51673601 to 51673609 8 - TSS region transcription start site region 116248
Cpgi4590 12 51690788 to 51692555 1767 CpG island CpG island 4590
Ap4s1 12 51690928 to 51738939 48011 + protein coding gene adaptor-related protein complex AP-4, sigma 1
Tssr113419 12 51690992 to 51691039 47 + TSS region transcription start site region 113419
Tssr113420 12 51691125 to 51691140 15 + TSS region transcription start site region 113420
Tssr113421 12 51691200 to 51691232 32 + TSS region transcription start site region 113421
Tssr116249 12 51691707 to 51691712 5 - TSS region transcription start site region 116249
Tssr116250 12 51691883 to 51691925 42 - TSS region transcription start site region 116250
Tssr116251 12 51692004 to 51692009 5 - TSS region transcription start site region 116251
Tssr116252 12 51692013 to 51692026 13 - TSS region transcription start site region 116252
Tssr116253 12 51692051 to 51692058 7 - TSS region transcription start site region 116253
Tssr116254 12 51692075 to 51692092 17 - TSS region transcription start site region 116254
Tssr113422 12 51692644 to 51692646 2 + TSS region transcription start site region 113422
D12Mit237 12 51738999 to 51739298 299 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 237
Gm22663 12 51740241 to 51740342 101 - snRNA gene predicted gene, 22663
Hectd1 12 51743722 to 51829536 85814 - protein coding gene HECT domain E3 ubiquitin protein ligase 1
Tssr116255 12 51762101 to 51762105 4 - TSS region transcription start site region 116255
Tssr116256 12 51773462 to 51773487 25 - TSS region transcription start site region 116256
Tssr116257 12 51773578 to 51773593 15 - TSS region transcription start site region 116257
Tssr113423 12 51797928 to 51797943 15 + TSS region transcription start site region 113423
Tssr116258 12 51800764 to 51800777 13 - TSS region transcription start site region 116258
Tssr116259 12 51802625 to 51802652 27 - TSS region transcription start site region 116259
Gm5785 12 51828185 to 51835675 7490 + protein coding gene predicted gene 5785
Cpgi4591 12 51828632 to 51830329 1697 CpG island CpG island 4591
Tssr116260 12 51829281 to 51829357 76 - TSS region transcription start site region 116260
Tssr113424 12 51829344 to 51829393 49 + TSS region transcription start site region 113424
Tssr116261 12 51829498 to 51829517 19 - TSS region transcription start site region 116261
Tssr116262 12 51829525 to 51829553 28 - TSS region transcription start site region 116262
Tssr116263 12 51829562 to 51829589 27 - TSS region transcription start site region 116263
Tssr116264 12 51829595 to 51829610 15 - TSS region transcription start site region 116264
Tssr116265 12 51829736 to 51829803 67 - TSS region transcription start site region 116265
Tssr116266 12 51829859 to 51829870 11 - TSS region transcription start site region 116266
Tssr116267 12 51830089 to 51830105 16 - TSS region transcription start site region 116267
Tssr116268 12 51830181 to 51830221 40 - TSS region transcription start site region 116268
Tssr113425 12 51838538 to 51838539 1 + TSS region transcription start site region 113425
Gm19309 12 51840417 to 51840621 204 - pseudogene predicted gene, 19309
Tssr116269 12 51840717 to 51840739 22 - TSS region transcription start site region 116269
Gm34894 12 51841639 to 51852653 11014 - lncRNA gene predicted gene, 34894
Tssr116270 12 51847844 to 51847852 8 - TSS region transcription start site region 116270
Tssr116271 12 51851735 to 51851746 11 - TSS region transcription start site region 116271
Tssr116272 12 51851767 to 51851783 16 - TSS region transcription start site region 116272
Tssr116273 12 51858328 to 51858348 20 - TSS region transcription start site region 116273
Tssr116274 12 51865870 to 51865883 13 - TSS region transcription start site region 116274
Tssr113426 12 51866122 to 51866130 8 + TSS region transcription start site region 113426
Tssr116275 12 51866402 to 51866417 15 - TSS region transcription start site region 116275
Tssr116276 12 51866426 to 51866445 19 - TSS region transcription start site region 116276
Heatr5a 12 51875871 to 51971321 95450 - protein coding gene HEAT repeat containing 5A
Dipa8 12 51887089 to 51887236 147 QTL drug induced psychomotor activation 8
D12Mit110 12 51887089 to 51887236 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 110
Gm26517 12 51888015 to 51889459 1444 + lincRNA gene predicted gene, 26517
Tssr116277 12 51925403 to 51925408 5 - TSS region transcription start site region 116277
Tssr116278 12 51925429 to 51925438 9 - TSS region transcription start site region 116278
Tssr116279 12 51939906 to 51939963 57 - TSS region transcription start site region 116279
Cpgi4592 12 51970809 to 51971515 706 CpG island CpG island 4592
C230081H03Rik 12 51970858 to 51972360 1502 unclassified non-coding RNA gene RIKEN cDNA C230081H03 gene
Tssr116280 12 51971250 to 51971284 34 - TSS region transcription start site region 116280
Tssr116281 12 51971289 to 51971326 37 - TSS region transcription start site region 116281
Dtd2 12 51988312 to 52006501 18189 - protein coding gene D-tyrosyl-tRNA deacylase 2
Tssr116282 12 51994092 to 51994093 1 - TSS region transcription start site region 116282
Gm47399 12 51995036 to 51995509 473 + pseudogene predicted gene, 47399
Cpgi4593 12 52006026 to 52006649 623 CpG island CpG island 4593
Tssr116283 12 52006490 to 52006512 22 - TSS region transcription start site region 116283
Gpr33 12 52023003 to 52028063 5060 - protein coding gene G protein-coupled receptor 33
Gm32220 12 52079014 to 52079311 297 + pseudogene predicted gene, 32220
Tssr113427 12 52079100 to 52079117 17 + TSS region transcription start site region 113427
Cpgi4594 12 52097621 to 52098017 396 CpG island CpG island 4594
Tssr113428 12 52097729 to 52097736 7 + TSS region transcription start site region 113428
Tssr113429 12 52097737 to 52097775 38 + TSS region transcription start site region 113429
Nubpl 12 52097746 to 52310970 213224 + protein coding gene nucleotide binding protein-like
Tssr113430 12 52216656 to 52216660 4 + TSS region transcription start site region 113430
Tssr113431 12 52265734 to 52265760 26 + TSS region transcription start site region 113431
Gm40423 12 52361367 to 52365362 3995 + lncRNA gene predicted gene, 40423
Tssr116284 12 52395285 to 52395321 36 - TSS region transcription start site region 116284
Gm47431 12 52401359 to 52448125 46766 - lincRNA gene predicted gene, 47431
Gm35071 12 52446384 to 52453891 7507 + lncRNA gene predicted gene, 35071
Tssr113432 12 52446884 to 52446907 23 + TSS region transcription start site region 113432
Gm35135 12 52475739 to 52480609 4870 - lincRNA gene predicted gene, 35135
Gm35188 12 52496360 to 52503689 7329 - lincRNA gene predicted gene, 35188
Cpgi4595 12 52503228 to 52505118 1890 CpG island CpG island 4595
Tssr113433 12 52503753 to 52503786 33 + TSS region transcription start site region 113433
Tssr113434 12 52503923 to 52503949 26 + TSS region transcription start site region 113434
Arhgap5 12 52503972 to 52571975 68003 + protein coding gene Rho GTPase activating protein 5
Tssr113435 12 52503992 to 52504028 36 + TSS region transcription start site region 113435
Tssr113436 12 52504035 to 52504051 16 + TSS region transcription start site region 113436
Tssr113437 12 52504063 to 52504093 30 + TSS region transcription start site region 113437
Tssr113438 12 52504097 to 52504114 17 + TSS region transcription start site region 113438
Tssr113439 12 52504246 to 52504285 39 + TSS region transcription start site region 113439
Tssr3839 12 52504309 to 52504318 9 + TSS region transcription start site region 3839
Tssr113440 12 52505141 to 52505145 4 + TSS region transcription start site region 113440
Tssr113441 12 52507271 to 52507274 3 + TSS region transcription start site region 113441
Tssr113442 12 52516266 to 52516281 15 + TSS region transcription start site region 113442
Tssr113443 12 52529442 to 52529446 4 + TSS region transcription start site region 113443
Tssr113444 12 52575407 to 52575408 1 + TSS region transcription start site region 113444
1700031P21Rik 12 52599984 to 52602322 2338 - lincRNA gene RIKEN cDNA 1700031P21 gene
Tssr116285 12 52602311 to 52602348 37 - TSS region transcription start site region 116285