Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:48424287-50344316

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48587 12 48495219 to 48495486 267 + pseudogene predicted gene, 48587
Tssr3837 12 48529624 to 48529632 8 - TSS region transcription start site region 3837
Gm1818 12 48555308 to 48559885 4577 - pseudogene predicted gene 1818
Gm29818 12 48632293 to 48632457 164 + pseudogene predicted gene, 29818
Olfr1400-ps1 12 48903851 to 48904550 699 - pseudogene olfactory receptor 1400, pseudogene 1
Olfr1399-ps1 12 48905578 to 48905990 412 - pseudogene olfactory receptor 1399, pseudogene 1
Gm26454 12 49009883 to 49009989 106 + snRNA gene predicted gene, 26454
Gm7456 12 49140256 to 49141266 1010 + pseudogene predicted gene 7456
Gm18623 12 49324737 to 49325615 878 + pseudogene predicted gene, 18623
Gm34304 12 49368729 to 49381885 13156 - lincRNA gene predicted gene, 34304
Tssr113386 12 49377657 to 49377672 15 + TSS region transcription start site region 113386
Tssr113387 12 49377768 to 49377785 17 + TSS region transcription start site region 113387
Tssr113388 12 49377821 to 49377851 30 + TSS region transcription start site region 113388
Tssr116231 12 49381824 to 49381830 6 - TSS region transcription start site region 116231
Tssr113389 12 49381974 to 49381995 21 + TSS region transcription start site region 113389
Tssr113390 12 49382057 to 49382078 21 + TSS region transcription start site region 113390
Tssr113391 12 49382652 to 49382667 15 + TSS region transcription start site region 113391
Tssr113392 12 49382676 to 49382691 15 + TSS region transcription start site region 113392
Tssr113393 12 49382791 to 49382802 11 + TSS region transcription start site region 113393
Foxg1 12 49382883 to 49386867 3984 + protein coding gene forkhead box G1
Cpgi4581 12 49382961 to 49385884 2923 CpG island CpG island 4581
Tssr113394 12 49383085 to 49383105 20 + TSS region transcription start site region 113394
Tssr113395 12 49383917 to 49383963 46 + TSS region transcription start site region 113395
Tssr113396 12 49384125 to 49384157 32 + TSS region transcription start site region 113396
Tssr113397 12 49384258 to 49384282 24 + TSS region transcription start site region 113397
Tssr113398 12 49384287 to 49384316 29 + TSS region transcription start site region 113398
Tssr3838 12 49384332 to 49384343 11 + TSS region transcription start site region 3838
Tssr113399 12 49384356 to 49384365 9 + TSS region transcription start site region 113399
Tssr113400 12 49384366 to 49384398 32 + TSS region transcription start site region 113400
Tssr113401 12 49384510 to 49384523 13 + TSS region transcription start site region 113401
Tssr113402 12 49384560 to 49384580 20 + TSS region transcription start site region 113402
Tssr113403 12 49384935 to 49384946 11 + TSS region transcription start site region 113403
Tssr113404 12 49384961 to 49384972 11 + TSS region transcription start site region 113404
Tssr113405 12 49384986 to 49385028 42 + TSS region transcription start site region 113405
Gm43517 12 49385174 to 49394127 8953 + protein coding gene predicted gene 43517
Tssr113406 12 49385189 to 49385199 10 + TSS region transcription start site region 113406
Tssr113407 12 49385444 to 49385463 19 + TSS region transcription start site region 113407
Tssr113408 12 49385652 to 49385658 6 + TSS region transcription start site region 113408
3110039M20Rik 12 49389652 to 49407346 17694 + lincRNA gene RIKEN cDNA 3110039M20 gene
Tssr113409 12 49389859 to 49389894 35 + TSS region transcription start site region 113409
Cpgi4582 12 49391252 to 49392143 891 CpG island CpG island 4582
Cpgi4583 12 49394936 to 49395142 206 CpG island CpG island 4583
Cpgi4584 12 49401024 to 49401976 952 CpG island CpG island 4584
Gm48659 12 49411814 to 49412248 434 - pseudogene predicted gene, 48659
Gm34381 12 49452793 to 49476037 23244 + lncRNA gene predicted gene, 34381
1810007C17Rik 12 49476993 to 49480862 3869 - lincRNA gene RIKEN cDNA 1810007C17 gene
Gm19599 12 49499008 to 49499365 357 + pseudogene predicted gene, 19599
Gm25015 12 49578456 to 49578583 127 - snoRNA gene predicted gene, 25015
Gm7476 12 49776115 to 49776775 660 - pseudogene predicted gene 7476
Tssr116232 12 49776819 to 49776820 1 - TSS region transcription start site region 116232
Gm7481 12 49840757 to 49841751 994 - pseudogene predicted gene 7481
Tssr116233 12 49841822 to 49841824 2 - TSS region transcription start site region 116233
Tssr113410 12 49949201 to 49949218 17 + TSS region transcription start site region 113410
Gm40419 12 50017406 to 50123358 105952 - lncRNA gene predicted gene, 40419
Gm40418 12 50120309 to 50145236 24927 + lincRNA gene predicted gene, 40418
Gm34523 12 50198069 to 50222058 23989 - lncRNA gene predicted gene, 34523
Prkd1 12 50341231 to 50649098 307867 - protein coding gene protein kinase D1