Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:44465109-45685153

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nrcam 12 44328885 to 44601964 273079 + protein coding gene neuronal cell adhesion molecule
Tssr113371 12 44525557 to 44525562 5 + TSS region transcription start site region 113371
Tssr113372 12 44525606 to 44525622 16 + TSS region transcription start site region 113372
Tssr113373 12 44525638 to 44525660 22 + TSS region transcription start site region 113373
Tssr3835 12 44525672 to 44525675 3 + TSS region transcription start site region 3835
Tssr113374 12 44525692 to 44525702 10 + TSS region transcription start site region 113374
Tssr113375 12 44525711 to 44525730 19 + TSS region transcription start site region 113375
Tssr113376 12 44525738 to 44525741 3 + TSS region transcription start site region 113376
Tssr113377 12 44528908 to 44528933 25 + TSS region transcription start site region 113377
Tssr113378 12 44546766 to 44546775 9 + TSS region transcription start site region 113378
Gm6125 12 44619191 to 44622662 3471 - pseudogene predicted gene 6125
Gm19469 12 44758213 to 44758931 718 - pseudogene predicted gene, 19469
D12Mit272 12 44842154 to 44842274 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 272
Stxbp6 12 44852484 to 45074483 221999 - protein coding gene syntaxin binding protein 6 (amisyn)
D12Mit245 12 44920603 to 44920716 113 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 245
Gm15901 12 44923197 to 44924343 1146 + pseudogene predicted gene 15901
Gm33548 12 44925017 to 44932943 7926 + lncRNA gene predicted gene, 33548
Tssr113379 12 44930505 to 44930508 3 + TSS region transcription start site region 113379
Gm15902 12 44959647 to 44970878 11231 - sense intronic lncRNA gene predicted gene 15902
Gm38487 12 45010826 to 45018433 7607 - lncRNA gene predicted gene, 38487
Cpgi4578 12 45073712 to 45074839 1127 CpG island CpG island 4578
Tssr116198 12 45074294 to 45074306 12 - TSS region transcription start site region 116198
Tssr116199 12 45074315 to 45074347 32 - TSS region transcription start site region 116199
Tssr116200 12 45074359 to 45074388 29 - TSS region transcription start site region 116200
Tssr116201 12 45074457 to 45074488 31 - TSS region transcription start site region 116201
Tssr116202 12 45075109 to 45075153 44 - TSS region transcription start site region 116202
Tssr116203 12 45086078 to 45086083 5 - TSS region transcription start site region 116203
Tssr113380 12 45094001 to 45094019 18 + TSS region transcription start site region 113380
Gm48508 12 45094012 to 45162048 68036 + lincRNA gene predicted gene, 48508
Tssr116204 12 45099454 to 45099463 9 - TSS region transcription start site region 116204
Gm24731 12 45109007 to 45109137 130 + snoRNA gene predicted gene, 24731
D12Mit236 12 45116358 to 45116478 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 236
Gm22076 12 45359699 to 45359782 83 + rRNA gene predicted gene, 22076
Gm9921 12 45429377 to 45441698 12321 + lincRNA gene predicted gene 9921
Gm33680 12 45466282 to 45495325 29043 + lincRNA gene predicted gene, 33680
Tssr3836 12 45468466 to 45468467 1 + TSS region transcription start site region 3836
Gm48517 12 45572431 to 45573287 856 - pseudogene predicted gene, 48517
Tssr116205 12 45573309 to 45573310 1 - TSS region transcription start site region 116205
Gm48518 12 45669499 to 45671793 2294 - unclassified gene predicted gene, 48518