Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:43548882-45108954

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33384 12 43627176 to 43851503 224327 - lncRNA gene predicted gene, 33384
Gm26326 12 43743037 to 43743165 128 + snoRNA gene predicted gene, 26326
Gm47036 12 43750774 to 43754614 3840 + pseudogene predicted gene, 47036
Gm10165 12 43810543 to 43844193 33650 - lincRNA gene predicted gene 10165
Gm46349 12 43955897 to 43956679 782 - lincRNA gene predicted gene, 46349
Tssr3832 12 44075497 to 44075498 1 + TSS region transcription start site region 3832
Gm47056 12 44121756 to 44125600 3844 + pseudogene predicted gene, 47056
Gm7370 12 44202405 to 44203171 766 - pseudogene predicted gene 7370
Tssr116189 12 44203210 to 44203220 10 - TSS region transcription start site region 116189
Dnajb9 12 44205897 to 44210068 4171 - protein coding gene DnaJ heat shock protein family (Hsp40) member B9
Tssr116190 12 44207077 to 44207084 7 - TSS region transcription start site region 116190
Cpgi4574 12 44209304 to 44210534 1230 CpG island CpG island 4574
Tssr116191 12 44210061 to 44210077 16 - TSS region transcription start site region 116191
Tssr116192 12 44210095 to 44210104 9 - TSS region transcription start site region 116192
Tssr116193 12 44210114 to 44210127 13 - TSS region transcription start site region 116193
Tssr116194 12 44210178 to 44210185 7 - TSS region transcription start site region 116194
Mir5627 12 44210313 to 44210373 60 + miRNA gene microRNA 5627
Tssr113358 12 44210371 to 44210394 23 + TSS region transcription start site region 113358
Tssr116195 12 44210378 to 44210388 10 - TSS region transcription start site region 116195
Gm47096 12 44220387 to 44269118 48731 - lincRNA gene predicted gene, 47096
Tssr113359 12 44221352 to 44221355 3 + TSS region transcription start site region 113359
Cpgi4575 12 44221651 to 44222322 671 CpG island CpG island 4575
Gm2027 12 44221745 to 44223373 1628 + pseudogene predicted gene 2027
Tssr3833 12 44254739 to 44254750 11 + TSS region transcription start site region 3833
Cpgi4576 12 44268785 to 44269857 1072 CpG island CpG island 4576
Tssr116196 12 44268995 to 44269007 12 - TSS region transcription start site region 116196
Tssr116197 12 44269025 to 44269053 28 - TSS region transcription start site region 116197
Pnpla8 12 44269130 to 44315935 46805 + protein coding gene patatin-like phospholipase domain containing 8
Tssr113360 12 44269145 to 44269227 82 + TSS region transcription start site region 113360
Tssr113361 12 44269241 to 44269248 7 + TSS region transcription start site region 113361
Cpgi4577 12 44328480 to 44330317 1837 CpG island CpG island 4577
Tssr113362 12 44328541 to 44328548 7 + TSS region transcription start site region 113362
Tssr113363 12 44328560 to 44328573 13 + TSS region transcription start site region 113363
Tssr113364 12 44328849 to 44328863 14 + TSS region transcription start site region 113364
Tssr113365 12 44328882 to 44328954 72 + TSS region transcription start site region 113365
Nrcam 12 44328885 to 44601964 273079 + protein coding gene neuronal cell adhesion molecule
Tssr113366 12 44328964 to 44329009 45 + TSS region transcription start site region 113366
Tssr113367 12 44329192 to 44329209 17 + TSS region transcription start site region 113367
Gm48181 12 44373197 to 44374262 1065 + unclassified gene predicted gene, 48181
Tssr113368 12 44400830 to 44400834 4 + TSS region transcription start site region 113368
Gm48182 12 44409790 to 44411469 1679 + unclassified gene predicted gene, 48182
Tssr3834 12 44439012 to 44439041 29 + TSS region transcription start site region 3834
Tssr113369 12 44439046 to 44439069 23 + TSS region transcription start site region 113369
Tssr113370 12 44439078 to 44439089 11 + TSS region transcription start site region 113370
Tssr113371 12 44525557 to 44525562 5 + TSS region transcription start site region 113371
Tssr113372 12 44525606 to 44525622 16 + TSS region transcription start site region 113372
Tssr113373 12 44525638 to 44525660 22 + TSS region transcription start site region 113373
Tssr3835 12 44525672 to 44525675 3 + TSS region transcription start site region 3835
Tssr113374 12 44525692 to 44525702 10 + TSS region transcription start site region 113374
Tssr113375 12 44525711 to 44525730 19 + TSS region transcription start site region 113375
Tssr113376 12 44525738 to 44525741 3 + TSS region transcription start site region 113376
Tssr113377 12 44528908 to 44528933 25 + TSS region transcription start site region 113377
Tssr113378 12 44546766 to 44546775 9 + TSS region transcription start site region 113378
Gm6125 12 44619191 to 44622662 3471 - pseudogene predicted gene 6125
Gm19469 12 44758213 to 44758931 718 - pseudogene predicted gene, 19469
D12Mit272 12 44842154 to 44842274 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 272
Stxbp6 12 44852484 to 45074483 221999 - protein coding gene syntaxin binding protein 6 (amisyn)
D12Mit245 12 44920603 to 44920716 113 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 245
Gm15901 12 44923197 to 44924343 1146 + pseudogene predicted gene 15901
Gm33548 12 44925017 to 44932943 7926 + lncRNA gene predicted gene, 33548
Tssr113379 12 44930505 to 44930508 3 + TSS region transcription start site region 113379
Gm15902 12 44959647 to 44970878 11231 - sense intronic lncRNA gene predicted gene 15902
Gm38487 12 45010826 to 45018433 7607 - lncRNA gene predicted gene, 38487
Cpgi4578 12 45073712 to 45074839 1127 CpG island CpG island 4578
Tssr116198 12 45074294 to 45074306 12 - TSS region transcription start site region 116198
Tssr116199 12 45074315 to 45074347 32 - TSS region transcription start site region 116199
Tssr116200 12 45074359 to 45074388 29 - TSS region transcription start site region 116200
Tssr116201 12 45074457 to 45074488 31 - TSS region transcription start site region 116201
Tssr116202 12 45075109 to 45075153 44 - TSS region transcription start site region 116202
Tssr116203 12 45086078 to 45086083 5 - TSS region transcription start site region 116203
Tssr113380 12 45094001 to 45094019 18 + TSS region transcription start site region 113380
Gm48508 12 45094012 to 45162048 68036 + lincRNA gene predicted gene, 48508
Tssr116204 12 45099454 to 45099463 9 - TSS region transcription start site region 116204