Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:42760095-45660104

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit235 12 42849089 to 42849238 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 235
D12Mit1001 12 42895658 to 42895774 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1001
Gm33340 12 43006469 to 43034225 27756 - lincRNA gene predicted gene, 33340
Gm47030 12 43306143 to 43364488 58345 + lincRNA gene predicted gene, 47030
Tssr113357 12 43460165 to 43460170 5 + TSS region transcription start site region 113357
Gm33384 12 43627176 to 43851503 224327 - lncRNA gene predicted gene, 33384
Gm26326 12 43743037 to 43743165 128 + snoRNA gene predicted gene, 26326
Gm47036 12 43750774 to 43754614 3840 + pseudogene predicted gene, 47036
Gm10165 12 43810543 to 43844193 33650 - lincRNA gene predicted gene 10165
Gm46349 12 43955897 to 43956679 782 - lincRNA gene predicted gene, 46349
Tssr3832 12 44075497 to 44075498 1 + TSS region transcription start site region 3832
Gm47056 12 44121756 to 44125600 3844 + pseudogene predicted gene, 47056
Gm7370 12 44202405 to 44203171 766 - pseudogene predicted gene 7370
Tssr116189 12 44203210 to 44203220 10 - TSS region transcription start site region 116189
Dnajb9 12 44205897 to 44210068 4171 - protein coding gene DnaJ heat shock protein family (Hsp40) member B9
Tssr116190 12 44207077 to 44207084 7 - TSS region transcription start site region 116190
Cpgi4574 12 44209304 to 44210534 1230 CpG island CpG island 4574
Tssr116191 12 44210061 to 44210077 16 - TSS region transcription start site region 116191
Tssr116192 12 44210095 to 44210104 9 - TSS region transcription start site region 116192
Tssr116193 12 44210114 to 44210127 13 - TSS region transcription start site region 116193
Tssr116194 12 44210178 to 44210185 7 - TSS region transcription start site region 116194
Mir5627 12 44210313 to 44210373 60 + miRNA gene microRNA 5627
Tssr113358 12 44210371 to 44210394 23 + TSS region transcription start site region 113358
Tssr116195 12 44210378 to 44210388 10 - TSS region transcription start site region 116195
Gm47096 12 44220387 to 44269118 48731 - lincRNA gene predicted gene, 47096
Tssr113359 12 44221352 to 44221355 3 + TSS region transcription start site region 113359
Cpgi4575 12 44221651 to 44222322 671 CpG island CpG island 4575
Gm2027 12 44221745 to 44223373 1628 + pseudogene predicted gene 2027
Tssr3833 12 44254739 to 44254750 11 + TSS region transcription start site region 3833
Cpgi4576 12 44268785 to 44269857 1072 CpG island CpG island 4576
Tssr116196 12 44268995 to 44269007 12 - TSS region transcription start site region 116196
Tssr116197 12 44269025 to 44269053 28 - TSS region transcription start site region 116197
Pnpla8 12 44269130 to 44315935 46805 + protein coding gene patatin-like phospholipase domain containing 8
Tssr113360 12 44269145 to 44269227 82 + TSS region transcription start site region 113360
Tssr113361 12 44269241 to 44269248 7 + TSS region transcription start site region 113361
Cpgi4577 12 44328480 to 44330317 1837 CpG island CpG island 4577
Tssr113362 12 44328541 to 44328548 7 + TSS region transcription start site region 113362
Tssr113363 12 44328560 to 44328573 13 + TSS region transcription start site region 113363
Tssr113364 12 44328849 to 44328863 14 + TSS region transcription start site region 113364
Tssr113365 12 44328882 to 44328954 72 + TSS region transcription start site region 113365
Nrcam 12 44328885 to 44601964 273079 + protein coding gene neuronal cell adhesion molecule
Tssr113366 12 44328964 to 44329009 45 + TSS region transcription start site region 113366
Tssr113367 12 44329192 to 44329209 17 + TSS region transcription start site region 113367
Gm48181 12 44373197 to 44374262 1065 + unclassified gene predicted gene, 48181
Tssr113368 12 44400830 to 44400834 4 + TSS region transcription start site region 113368
Gm48182 12 44409790 to 44411469 1679 + unclassified gene predicted gene, 48182
Tssr3834 12 44439012 to 44439041 29 + TSS region transcription start site region 3834
Tssr113369 12 44439046 to 44439069 23 + TSS region transcription start site region 113369
Tssr113370 12 44439078 to 44439089 11 + TSS region transcription start site region 113370
Tssr113371 12 44525557 to 44525562 5 + TSS region transcription start site region 113371
Tssr113372 12 44525606 to 44525622 16 + TSS region transcription start site region 113372
Tssr113373 12 44525638 to 44525660 22 + TSS region transcription start site region 113373
Tssr3835 12 44525672 to 44525675 3 + TSS region transcription start site region 3835
Tssr113374 12 44525692 to 44525702 10 + TSS region transcription start site region 113374
Tssr113375 12 44525711 to 44525730 19 + TSS region transcription start site region 113375
Tssr113376 12 44525738 to 44525741 3 + TSS region transcription start site region 113376
Tssr113377 12 44528908 to 44528933 25 + TSS region transcription start site region 113377
Tssr113378 12 44546766 to 44546775 9 + TSS region transcription start site region 113378
Gm6125 12 44619191 to 44622662 3471 - pseudogene predicted gene 6125
Gm19469 12 44758213 to 44758931 718 - pseudogene predicted gene, 19469
D12Mit272 12 44842154 to 44842274 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 272
Stxbp6 12 44852484 to 45074483 221999 - protein coding gene syntaxin binding protein 6 (amisyn)
D12Mit245 12 44920603 to 44920716 113 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 245
Gm15901 12 44923197 to 44924343 1146 + pseudogene predicted gene 15901
Gm33548 12 44925017 to 44932943 7926 + lncRNA gene predicted gene, 33548
Tssr113379 12 44930505 to 44930508 3 + TSS region transcription start site region 113379
Gm15902 12 44959647 to 44970878 11231 - sense intronic lncRNA gene predicted gene 15902
Gm38487 12 45010826 to 45018433 7607 - lncRNA gene predicted gene, 38487
Cpgi4578 12 45073712 to 45074839 1127 CpG island CpG island 4578
Tssr116198 12 45074294 to 45074306 12 - TSS region transcription start site region 116198
Tssr116199 12 45074315 to 45074347 32 - TSS region transcription start site region 116199
Tssr116200 12 45074359 to 45074388 29 - TSS region transcription start site region 116200
Tssr116201 12 45074457 to 45074488 31 - TSS region transcription start site region 116201
Tssr116202 12 45075109 to 45075153 44 - TSS region transcription start site region 116202
Tssr116203 12 45086078 to 45086083 5 - TSS region transcription start site region 116203
Tssr113380 12 45094001 to 45094019 18 + TSS region transcription start site region 113380
Gm48508 12 45094012 to 45162048 68036 + lincRNA gene predicted gene, 48508
Tssr116204 12 45099454 to 45099463 9 - TSS region transcription start site region 116204
Gm24731 12 45109007 to 45109137 130 + snoRNA gene predicted gene, 24731
D12Mit236 12 45116358 to 45116478 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 236
Gm22076 12 45359699 to 45359782 83 + rRNA gene predicted gene, 22076
Gm9921 12 45429377 to 45441698 12321 + lincRNA gene predicted gene 9921
Gm33680 12 45466282 to 45495325 29043 + lincRNA gene predicted gene, 33680
Tssr3836 12 45468466 to 45468467 1 + TSS region transcription start site region 3836
Gm48517 12 45572431 to 45573287 856 - pseudogene predicted gene, 48517
Tssr116205 12 45573309 to 45573310 1 - TSS region transcription start site region 116205