Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:40733515-43323521

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dock4 12 40445957 to 40846874 400917 + protein coding gene dedicator of cytokinesis 4
5730420F10Rik 12 40768889 to 40770575 1686 unclassified gene RIKEN cDNA 5730420F10 gene
Tssr113341 12 40794259 to 40794271 12 + TSS region transcription start site region 113341
Tssr113342 12 40794284 to 40794298 14 + TSS region transcription start site region 113342
Cpgi4572 12 40844172 to 40844555 383 CpG island CpG island 4572
Gm19441 12 40875537 to 40875866 329 + pseudogene predicted gene, 19441
Gm7239 12 40883758 to 40884614 856 - pseudogene predicted gene 7239
Gm19220 12 40893485 to 40894287 802 + pseudogene predicted gene, 19220
Gm18246 12 40917348 to 40917917 569 + pseudogene predicted gene, 18246
Tssr3830 12 41013303 to 41013313 10 + TSS region transcription start site region 3830
Gm18954 12 41016855 to 41020252 3397 - pseudogene predicted gene, 18954
Cpgi4573 12 41023776 to 41024698 922 CpG island CpG island 4573
Immp2l 12 41024090 to 41955588 931498 + protein coding gene IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
Tssr113343 12 41024096 to 41024134 38 + TSS region transcription start site region 113343
Tssr113344 12 41024355 to 41024367 12 + TSS region transcription start site region 113344
Tssr113345 12 41024379 to 41024390 11 + TSS region transcription start site region 113345
Gm47375 12 41041824 to 41044939 3115 - antisense lncRNA gene predicted gene, 47375
Gm4274 12 41116217 to 41146574 30357 - pseudogene predicted gene 4274
Tssr113346 12 41151090 to 41151102 12 + TSS region transcription start site region 113346
Tssr113347 12 41192887 to 41192890 3 + TSS region transcription start site region 113347
Tssr113348 12 41253693 to 41253704 11 + TSS region transcription start site region 113348
Tssr113349 12 41257284 to 41257285 1 + TSS region transcription start site region 113349
Tssr113350 12 41261054 to 41261058 4 + TSS region transcription start site region 113350
Tssr113351 12 41263234 to 41263238 4 + TSS region transcription start site region 113351
Gm47376 12 41342820 to 41348090 5270 - antisense lncRNA gene predicted gene, 47376
Tssr116183 12 41348093 to 41348104 11 - TSS region transcription start site region 116183
Gm25497 12 41348441 to 41348572 131 - snoRNA gene predicted gene, 25497
D12Mit125 12 41351866 to 41352060 194 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 125
Gm47373 12 41386379 to 41391216 4837 - antisense lncRNA gene predicted gene, 47373
Tssr113352 12 41395737 to 41395742 5 + TSS region transcription start site region 113352
Gm47368 12 41405131 to 41412665 7534 - antisense lncRNA gene predicted gene, 47368
Tssr116184 12 41412640 to 41412650 10 - TSS region transcription start site region 116184
Tssr116185 12 41412655 to 41412677 22 - TSS region transcription start site region 116185
D12Mit62 12 41448690 to 41448916 226 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 62
Lrrn3 12 41451668 to 41486057 34389 - protein coding gene leucine rich repeat protein 3, neuronal
Tssr116186 12 41485944 to 41485960 16 - TSS region transcription start site region 116186
Tssr116187 12 41485980 to 41485995 15 - TSS region transcription start site region 116187
Tssr113353 12 41498937 to 41498939 2 + TSS region transcription start site region 113353
Gm47374 12 41545391 to 41547884 2493 + unclassified gene predicted gene, 47374
Gm40412 12 41593438 to 41607709 14271 - lncRNA gene predicted gene, 40412
D12Mit2 12 41646392 to 41646525 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 2
Splwt1 12 41646392 to 90920752 49274360 QTL spleen weight 1
Gm47369 12 41684394 to 41684718 324 + pseudogene predicted gene, 47369
Tssr113354 12 41732418 to 41732421 3 + TSS region transcription start site region 113354
D12Mit244 12 41763238 to 41763345 107 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 244
Gm47371 12 41798182 to 41828523 30341 - antisense lncRNA gene predicted gene, 47371
Tssr113355 12 41825804 to 41825808 4 + TSS region transcription start site region 113355
Tssr116188 12 41878596 to 41878634 38 - TSS region transcription start site region 116188
Gm46348 12 41951821 to 41992035 40214 - lincRNA gene predicted gene, 46348
Gm47012 12 42017880 to 42025420 7540 + pseudogene predicted gene, 47012
Gm7242 12 42028212 to 42028913 701 + pseudogene predicted gene 7242
Tssr113356 12 42028515 to 42028521 6 + TSS region transcription start site region 113356
D12Mit109 12 42047938 to 42048061 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 109
Gm47013 12 42088439 to 42115803 27364 + lincRNA gene predicted gene, 47013
Gm47020 12 42117824 to 42151840 34016 - lincRNA gene predicted gene, 47020
Gm25248 12 42281716 to 42281813 97 + miRNA gene predicted gene, 25248
Tssr3831 12 42346718 to 42346719 1 + TSS region transcription start site region 3831
n-TEctc2 12 42415075 to 42415146 71 - tRNA gene nuclear encoded tRNA glutamic acid 2 (anticodon CTC)
D12Mit187 12 42468920 to 42469014 94 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 187
D12Mit235 12 42849089 to 42849238 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 235
D12Mit1001 12 42895658 to 42895774 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1001
Gm33340 12 43006469 to 43034225 27756 - lincRNA gene predicted gene, 33340
Gm47030 12 43306143 to 43364488 58345 + lincRNA gene predicted gene, 47030