Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:40496469-45544225

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dock4 12 40445957 to 40846874 400917 + protein coding gene dedicator of cytokinesis 4
Tssr113323 12 40504182 to 40504186 4 + TSS region transcription start site region 113323
Tssr113324 12 40518910 to 40518936 26 + TSS region transcription start site region 113324
Tssr113325 12 40529621 to 40529626 5 + TSS region transcription start site region 113325
Tssr113326 12 40538838 to 40538843 5 + TSS region transcription start site region 113326
Tssr116182 12 40555113 to 40555125 12 - TSS region transcription start site region 116182
Tssr113327 12 40555700 to 40555713 13 + TSS region transcription start site region 113327
Tssr113328 12 40556242 to 40556255 13 + TSS region transcription start site region 113328
Tssr113329 12 40560240 to 40560260 20 + TSS region transcription start site region 113329
Tssr113330 12 40560265 to 40560279 14 + TSS region transcription start site region 113330
Tssr113331 12 40560390 to 40560401 11 + TSS region transcription start site region 113331
Tssr113332 12 40572804 to 40572811 7 + TSS region transcription start site region 113332
Tssr113333 12 40572831 to 40572845 14 + TSS region transcription start site region 113333
Tssr113334 12 40575616 to 40575618 2 + TSS region transcription start site region 113334
Tssr113335 12 40602273 to 40602306 33 + TSS region transcription start site region 113335
D12Mit148.1 12 40624287 to 40624397 110 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 148.1
D12Mit148 12 40624443 to 40624587 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 148
Tssr113336 12 40648280 to 40648289 9 + TSS region transcription start site region 113336
Tssr113337 12 40651990 to 40652010 20 + TSS region transcription start site region 113337
4732465E10Rik 12 40688009 to 40692090 4081 unclassified gene RIKEN cDNA 4732465E10 gene
Tssr113338 12 40695501 to 40695504 3 + TSS region transcription start site region 113338
Tssr113339 12 40712042 to 40712048 6 + TSS region transcription start site region 113339
Tssr113340 12 40718375 to 40718378 3 + TSS region transcription start site region 113340
5730420F10Rik 12 40768889 to 40770575 1686 unclassified gene RIKEN cDNA 5730420F10 gene
Tssr113341 12 40794259 to 40794271 12 + TSS region transcription start site region 113341
Tssr113342 12 40794284 to 40794298 14 + TSS region transcription start site region 113342
Cpgi4572 12 40844172 to 40844555 383 CpG island CpG island 4572
Gm19441 12 40875537 to 40875866 329 + pseudogene predicted gene, 19441
Gm7239 12 40883758 to 40884614 856 - pseudogene predicted gene 7239
Gm19220 12 40893485 to 40894287 802 + pseudogene predicted gene, 19220
Gm18246 12 40917348 to 40917917 569 + pseudogene predicted gene, 18246
Tssr3830 12 41013303 to 41013313 10 + TSS region transcription start site region 3830
Gm18954 12 41016855 to 41020252 3397 - pseudogene predicted gene, 18954
Cpgi4573 12 41023776 to 41024698 922 CpG island CpG island 4573
Immp2l 12 41024090 to 41955588 931498 + protein coding gene IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
Tssr113343 12 41024096 to 41024134 38 + TSS region transcription start site region 113343
Tssr113344 12 41024355 to 41024367 12 + TSS region transcription start site region 113344
Tssr113345 12 41024379 to 41024390 11 + TSS region transcription start site region 113345
Gm47375 12 41041824 to 41044939 3115 - antisense lncRNA gene predicted gene, 47375
Gm4274 12 41116217 to 41146574 30357 - pseudogene predicted gene 4274
Tssr113346 12 41151090 to 41151102 12 + TSS region transcription start site region 113346
Tssr113347 12 41192887 to 41192890 3 + TSS region transcription start site region 113347
Tssr113348 12 41253693 to 41253704 11 + TSS region transcription start site region 113348
Tssr113349 12 41257284 to 41257285 1 + TSS region transcription start site region 113349
Tssr113350 12 41261054 to 41261058 4 + TSS region transcription start site region 113350
Tssr113351 12 41263234 to 41263238 4 + TSS region transcription start site region 113351
Gm47376 12 41342820 to 41348090 5270 - antisense lncRNA gene predicted gene, 47376
Tssr116183 12 41348093 to 41348104 11 - TSS region transcription start site region 116183
Gm25497 12 41348441 to 41348572 131 - snoRNA gene predicted gene, 25497
D12Mit125 12 41351866 to 41352060 194 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 125
Gm47373 12 41386379 to 41391216 4837 - antisense lncRNA gene predicted gene, 47373
Tssr113352 12 41395737 to 41395742 5 + TSS region transcription start site region 113352
Gm47368 12 41405131 to 41412665 7534 - antisense lncRNA gene predicted gene, 47368
Tssr116184 12 41412640 to 41412650 10 - TSS region transcription start site region 116184
Tssr116185 12 41412655 to 41412677 22 - TSS region transcription start site region 116185
D12Mit62 12 41448690 to 41448916 226 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 62
Lrrn3 12 41451668 to 41486057 34389 - protein coding gene leucine rich repeat protein 3, neuronal
Tssr116186 12 41485944 to 41485960 16 - TSS region transcription start site region 116186
Tssr116187 12 41485980 to 41485995 15 - TSS region transcription start site region 116187
Tssr113353 12 41498937 to 41498939 2 + TSS region transcription start site region 113353
Gm47374 12 41545391 to 41547884 2493 + unclassified gene predicted gene, 47374
Gm40412 12 41593438 to 41607709 14271 - lncRNA gene predicted gene, 40412
Splwt1 12 41646392 to 90920752 49274360 QTL spleen weight 1
D12Mit2 12 41646392 to 41646525 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 2
Gm47369 12 41684394 to 41684718 324 + pseudogene predicted gene, 47369
Tssr113354 12 41732418 to 41732421 3 + TSS region transcription start site region 113354
D12Mit244 12 41763238 to 41763345 107 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 244
Gm47371 12 41798182 to 41828523 30341 - antisense lncRNA gene predicted gene, 47371
Tssr113355 12 41825804 to 41825808 4 + TSS region transcription start site region 113355
Tssr116188 12 41878596 to 41878634 38 - TSS region transcription start site region 116188
Gm46348 12 41951821 to 41992035 40214 - lincRNA gene predicted gene, 46348
Gm47012 12 42017880 to 42025420 7540 + pseudogene predicted gene, 47012
Gm7242 12 42028212 to 42028913 701 + pseudogene predicted gene 7242
Tssr113356 12 42028515 to 42028521 6 + TSS region transcription start site region 113356
D12Mit109 12 42047938 to 42048061 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 109
Gm47013 12 42088439 to 42115803 27364 + lincRNA gene predicted gene, 47013
Gm47020 12 42117824 to 42151840 34016 - lincRNA gene predicted gene, 47020
Gm25248 12 42281716 to 42281813 97 + miRNA gene predicted gene, 25248
Tssr3831 12 42346718 to 42346719 1 + TSS region transcription start site region 3831
n-TEctc2 12 42415075 to 42415146 71 - tRNA gene nuclear encoded tRNA glutamic acid 2 (anticodon CTC)
D12Mit187 12 42468920 to 42469014 94 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 187
D12Mit235 12 42849089 to 42849238 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 235
D12Mit1001 12 42895658 to 42895774 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1001
Gm33340 12 43006469 to 43034225 27756 - lincRNA gene predicted gene, 33340
Gm47030 12 43306143 to 43364488 58345 + lincRNA gene predicted gene, 47030
Tssr113357 12 43460165 to 43460170 5 + TSS region transcription start site region 113357
Gm33384 12 43627176 to 43851503 224327 - lncRNA gene predicted gene, 33384
Gm26326 12 43743037 to 43743165 128 + snoRNA gene predicted gene, 26326
Gm47036 12 43750774 to 43754614 3840 + pseudogene predicted gene, 47036
Gm10165 12 43810543 to 43844193 33650 - lincRNA gene predicted gene 10165
Gm46349 12 43955897 to 43956679 782 - lincRNA gene predicted gene, 46349
Tssr3832 12 44075497 to 44075498 1 + TSS region transcription start site region 3832
Gm47056 12 44121756 to 44125600 3844 + pseudogene predicted gene, 47056
Gm7370 12 44202405 to 44203171 766 - pseudogene predicted gene 7370
Tssr116189 12 44203210 to 44203220 10 - TSS region transcription start site region 116189
Dnajb9 12 44205897 to 44210068 4171 - protein coding gene DnaJ heat shock protein family (Hsp40) member B9
Tssr116190 12 44207077 to 44207084 7 - TSS region transcription start site region 116190
Cpgi4574 12 44209304 to 44210534 1230 CpG island CpG island 4574
Tssr116191 12 44210061 to 44210077 16 - TSS region transcription start site region 116191
Tssr116192 12 44210095 to 44210104 9 - TSS region transcription start site region 116192
Tssr116193 12 44210114 to 44210127 13 - TSS region transcription start site region 116193
Tssr116194 12 44210178 to 44210185 7 - TSS region transcription start site region 116194
Mir5627 12 44210313 to 44210373 60 + miRNA gene microRNA 5627
Tssr113358 12 44210371 to 44210394 23 + TSS region transcription start site region 113358
Tssr116195 12 44210378 to 44210388 10 - TSS region transcription start site region 116195
Gm47096 12 44220387 to 44269118 48731 - lincRNA gene predicted gene, 47096
Tssr113359 12 44221352 to 44221355 3 + TSS region transcription start site region 113359
Cpgi4575 12 44221651 to 44222322 671 CpG island CpG island 4575
Gm2027 12 44221745 to 44223373 1628 + pseudogene predicted gene 2027
Tssr3833 12 44254739 to 44254750 11 + TSS region transcription start site region 3833
Cpgi4576 12 44268785 to 44269857 1072 CpG island CpG island 4576
Tssr116196 12 44268995 to 44269007 12 - TSS region transcription start site region 116196
Tssr116197 12 44269025 to 44269053 28 - TSS region transcription start site region 116197
Pnpla8 12 44269130 to 44315935 46805 + protein coding gene patatin-like phospholipase domain containing 8
Tssr113360 12 44269145 to 44269227 82 + TSS region transcription start site region 113360
Tssr113361 12 44269241 to 44269248 7 + TSS region transcription start site region 113361
Cpgi4577 12 44328480 to 44330317 1837 CpG island CpG island 4577
Tssr113362 12 44328541 to 44328548 7 + TSS region transcription start site region 113362
Tssr113363 12 44328560 to 44328573 13 + TSS region transcription start site region 113363
Tssr113364 12 44328849 to 44328863 14 + TSS region transcription start site region 113364
Tssr113365 12 44328882 to 44328954 72 + TSS region transcription start site region 113365
Nrcam 12 44328885 to 44601964 273079 + protein coding gene neuronal cell adhesion molecule
Tssr113366 12 44328964 to 44329009 45 + TSS region transcription start site region 113366
Tssr113367 12 44329192 to 44329209 17 + TSS region transcription start site region 113367
Gm48181 12 44373197 to 44374262 1065 + unclassified gene predicted gene, 48181
Tssr113368 12 44400830 to 44400834 4 + TSS region transcription start site region 113368
Gm48182 12 44409790 to 44411469 1679 + unclassified gene predicted gene, 48182
Tssr3834 12 44439012 to 44439041 29 + TSS region transcription start site region 3834
Tssr113369 12 44439046 to 44439069 23 + TSS region transcription start site region 113369
Tssr113370 12 44439078 to 44439089 11 + TSS region transcription start site region 113370
Tssr113371 12 44525557 to 44525562 5 + TSS region transcription start site region 113371
Tssr113372 12 44525606 to 44525622 16 + TSS region transcription start site region 113372
Tssr113373 12 44525638 to 44525660 22 + TSS region transcription start site region 113373
Tssr3835 12 44525672 to 44525675 3 + TSS region transcription start site region 3835
Tssr113374 12 44525692 to 44525702 10 + TSS region transcription start site region 113374
Tssr113375 12 44525711 to 44525730 19 + TSS region transcription start site region 113375
Tssr113376 12 44525738 to 44525741 3 + TSS region transcription start site region 113376
Tssr113377 12 44528908 to 44528933 25 + TSS region transcription start site region 113377
Tssr113378 12 44546766 to 44546775 9 + TSS region transcription start site region 113378
Gm6125 12 44619191 to 44622662 3471 - pseudogene predicted gene 6125
Gm19469 12 44758213 to 44758931 718 - pseudogene predicted gene, 19469
D12Mit272 12 44842154 to 44842274 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 272
Stxbp6 12 44852484 to 45074483 221999 - protein coding gene syntaxin binding protein 6 (amisyn)
D12Mit245 12 44920603 to 44920716 113 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 245
Gm15901 12 44923197 to 44924343 1146 + pseudogene predicted gene 15901
Gm33548 12 44925017 to 44932943 7926 + lncRNA gene predicted gene, 33548
Tssr113379 12 44930505 to 44930508 3 + TSS region transcription start site region 113379
Gm15902 12 44959647 to 44970878 11231 - sense intronic lncRNA gene predicted gene 15902
Gm38487 12 45010826 to 45018433 7607 - lncRNA gene predicted gene, 38487
Cpgi4578 12 45073712 to 45074839 1127 CpG island CpG island 4578
Tssr116198 12 45074294 to 45074306 12 - TSS region transcription start site region 116198
Tssr116199 12 45074315 to 45074347 32 - TSS region transcription start site region 116199
Tssr116200 12 45074359 to 45074388 29 - TSS region transcription start site region 116200
Tssr116201 12 45074457 to 45074488 31 - TSS region transcription start site region 116201
Tssr116202 12 45075109 to 45075153 44 - TSS region transcription start site region 116202
Tssr116203 12 45086078 to 45086083 5 - TSS region transcription start site region 116203
Tssr113380 12 45094001 to 45094019 18 + TSS region transcription start site region 113380
Gm48508 12 45094012 to 45162048 68036 + lincRNA gene predicted gene, 48508
Tssr116204 12 45099454 to 45099463 9 - TSS region transcription start site region 116204
Gm24731 12 45109007 to 45109137 130 + snoRNA gene predicted gene, 24731
D12Mit236 12 45116358 to 45116478 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 236
Gm22076 12 45359699 to 45359782 83 + rRNA gene predicted gene, 22076
Gm9921 12 45429377 to 45441698 12321 + lincRNA gene predicted gene 9921
Gm33680 12 45466282 to 45495325 29043 + lincRNA gene predicted gene, 33680
Tssr3836 12 45468466 to 45468467 1 + TSS region transcription start site region 3836