Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:40120954-40290958

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scin 12 40059769 to 40134228 74459 - protein coding gene scinderin
Tssr116161 12 40124662 to 40124679 17 - TSS region transcription start site region 116161
Tssr113305 12 40124753 to 40124795 42 + TSS region transcription start site region 113305
Cpgi4569 12 40133868 to 40134328 460 CpG island CpG island 4569
Tssr116162 12 40134175 to 40134190 15 - TSS region transcription start site region 116162
Lsmem1 12 40176386 to 40199315 22929 - protein coding gene leucine-rich single-pass membrane protein 1
Gm17056 12 40198656 to 40201105 2449 + antisense lncRNA gene predicted gene 17056
Tssr116163 12 40199260 to 40199266 6 - TSS region transcription start site region 116163
Tssr116164 12 40199268 to 40199312 44 - TSS region transcription start site region 116164
Tssr116165 12 40199317 to 40199331 14 - TSS region transcription start site region 116165
Tssr116166 12 40199497 to 40199511 14 - TSS region transcription start site region 116166
Tssr116167 12 40199559 to 40199572 13 - TSS region transcription start site region 116167
Tssr116168 12 40199583 to 40199596 13 - TSS region transcription start site region 116168
Tssr116169 12 40201103 to 40201110 7 - TSS region transcription start site region 116169
Ifrd1 12 40203129 to 40223189 20060 - protein coding gene interferon-related developmental regulator 1
Tssr116170 12 40203437 to 40203456 19 - TSS region transcription start site region 116170
Tssr116171 12 40204353 to 40204365 12 - TSS region transcription start site region 116171
Tssr116172 12 40205954 to 40205958 4 - TSS region transcription start site region 116172
Gm17024 12 40209487 to 40211073 1586 - sense intronic lncRNA gene predicted gene 17024
Tssr116173 12 40209668 to 40209689 21 - TSS region transcription start site region 116173
Tssr116174 12 40210545 to 40210563 18 - TSS region transcription start site region 116174
Tssr116175 12 40217179 to 40217190 11 - TSS region transcription start site region 116175
Tssr116176 12 40222105 to 40222107 2 - TSS region transcription start site region 116176
Cpgi4570 12 40222142 to 40223705 1563 CpG island CpG island 4570
Tssr113306 12 40222250 to 40222260 10 + TSS region transcription start site region 113306
Mir1938 12 40222712 to 40222811 99 - miRNA gene microRNA 1938
Tssr116177 12 40223174 to 40223192 18 - TSS region transcription start site region 116177
Tssr113307 12 40223325 to 40223350 25 + TSS region transcription start site region 113307
Tssr116178 12 40223364 to 40223382 18 - TSS region transcription start site region 116178
Gm7008 12 40223364 to 40229183 5819 + antisense lncRNA gene predicted gene 7008
Tssr113308 12 40223571 to 40223616 45 + TSS region transcription start site region 113308
Gm47954 12 40225263 to 40225782 519 - pseudogene predicted gene, 47954
Gm40403 12 40240231 to 40248136 7905 - lncRNA gene predicted gene, 40403
Tssr116179 12 40248019 to 40248067 48 - TSS region transcription start site region 116179
Tssr116180 12 40248073 to 40248086 13 - TSS region transcription start site region 116180
Tssr113309 12 40248170 to 40248196 26 + TSS region transcription start site region 113309
D12Mit61 12 40274849 to 40274963 114 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 61