Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:40110754-40780798

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scin 12 40059769 to 40134228 74459 - protein coding gene scinderin
Tssr116160 12 40114127 to 40114164 37 - TSS region transcription start site region 116160
Tssr116161 12 40124662 to 40124679 17 - TSS region transcription start site region 116161
Tssr113305 12 40124753 to 40124795 42 + TSS region transcription start site region 113305
Cpgi4569 12 40133868 to 40134328 460 CpG island CpG island 4569
Tssr116162 12 40134175 to 40134190 15 - TSS region transcription start site region 116162
Lsmem1 12 40176386 to 40199315 22929 - protein coding gene leucine-rich single-pass membrane protein 1
Gm17056 12 40198656 to 40201105 2449 + antisense lncRNA gene predicted gene 17056
Tssr116163 12 40199260 to 40199266 6 - TSS region transcription start site region 116163
Tssr116164 12 40199268 to 40199312 44 - TSS region transcription start site region 116164
Tssr116165 12 40199317 to 40199331 14 - TSS region transcription start site region 116165
Tssr116166 12 40199497 to 40199511 14 - TSS region transcription start site region 116166
Tssr116167 12 40199559 to 40199572 13 - TSS region transcription start site region 116167
Tssr116168 12 40199583 to 40199596 13 - TSS region transcription start site region 116168
Tssr116169 12 40201103 to 40201110 7 - TSS region transcription start site region 116169
Ifrd1 12 40203129 to 40223189 20060 - protein coding gene interferon-related developmental regulator 1
Tssr116170 12 40203437 to 40203456 19 - TSS region transcription start site region 116170
Tssr116171 12 40204353 to 40204365 12 - TSS region transcription start site region 116171
Tssr116172 12 40205954 to 40205958 4 - TSS region transcription start site region 116172
Gm17024 12 40209487 to 40211073 1586 - sense intronic lncRNA gene predicted gene 17024
Tssr116173 12 40209668 to 40209689 21 - TSS region transcription start site region 116173
Tssr116174 12 40210545 to 40210563 18 - TSS region transcription start site region 116174
Tssr116175 12 40217179 to 40217190 11 - TSS region transcription start site region 116175
Tssr116176 12 40222105 to 40222107 2 - TSS region transcription start site region 116176
Cpgi4570 12 40222142 to 40223705 1563 CpG island CpG island 4570
Tssr113306 12 40222250 to 40222260 10 + TSS region transcription start site region 113306
Mir1938 12 40222712 to 40222811 99 - miRNA gene microRNA 1938
Tssr116177 12 40223174 to 40223192 18 - TSS region transcription start site region 116177
Tssr113307 12 40223325 to 40223350 25 + TSS region transcription start site region 113307
Gm7008 12 40223364 to 40229183 5819 + antisense lncRNA gene predicted gene 7008
Tssr116178 12 40223364 to 40223382 18 - TSS region transcription start site region 116178
Tssr113308 12 40223571 to 40223616 45 + TSS region transcription start site region 113308
Gm47954 12 40225263 to 40225782 519 - pseudogene predicted gene, 47954
Gm40403 12 40240231 to 40248136 7905 - lncRNA gene predicted gene, 40403
Tssr116179 12 40248019 to 40248067 48 - TSS region transcription start site region 116179
Tssr116180 12 40248073 to 40248086 13 - TSS region transcription start site region 116180
Tssr113309 12 40248170 to 40248196 26 + TSS region transcription start site region 113309
D12Mit61 12 40274849 to 40274963 114 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 61
Zfp277 12 40315046 to 40445790 130744 - protein coding gene zinc finger protein 277
Gm40406 12 40423731 to 40433682 9951 - lncRNA gene predicted gene, 40406
Cpgi4571 12 40445447 to 40446975 1528 CpG island CpG island 4571
Tssr116181 12 40445754 to 40445798 44 - TSS region transcription start site region 116181
Dock4 12 40445957 to 40846874 400917 + protein coding gene dedicator of cytokinesis 4
Tssr113310 12 40445993 to 40446015 22 + TSS region transcription start site region 113310
Tssr113311 12 40446050 to 40446099 49 + TSS region transcription start site region 113311
Tssr3829 12 40446119 to 40446128 9 + TSS region transcription start site region 3829
Tssr113312 12 40446148 to 40446159 11 + TSS region transcription start site region 113312
Tssr113313 12 40451025 to 40451061 36 + TSS region transcription start site region 113313
Tssr113314 12 40455034 to 40455038 4 + TSS region transcription start site region 113314
Tssr113315 12 40461121 to 40461138 17 + TSS region transcription start site region 113315
Tssr113316 12 40465178 to 40465202 24 + TSS region transcription start site region 113316
Tssr113317 12 40465212 to 40465226 14 + TSS region transcription start site region 113317
Tssr113318 12 40465649 to 40465672 23 + TSS region transcription start site region 113318
Tssr113319 12 40465727 to 40465769 42 + TSS region transcription start site region 113319
Tssr113320 12 40472718 to 40472733 15 + TSS region transcription start site region 113320
Tssr113321 12 40472867 to 40472871 4 + TSS region transcription start site region 113321
Tssr113322 12 40480757 to 40480774 17 + TSS region transcription start site region 113322
Tssr113323 12 40504182 to 40504186 4 + TSS region transcription start site region 113323
Tssr113324 12 40518910 to 40518936 26 + TSS region transcription start site region 113324
Tssr113325 12 40529621 to 40529626 5 + TSS region transcription start site region 113325
Tssr113326 12 40538838 to 40538843 5 + TSS region transcription start site region 113326
Tssr116182 12 40555113 to 40555125 12 - TSS region transcription start site region 116182
Tssr113327 12 40555700 to 40555713 13 + TSS region transcription start site region 113327
Tssr113328 12 40556242 to 40556255 13 + TSS region transcription start site region 113328
Tssr113329 12 40560240 to 40560260 20 + TSS region transcription start site region 113329
Tssr113330 12 40560265 to 40560279 14 + TSS region transcription start site region 113330
Tssr113331 12 40560390 to 40560401 11 + TSS region transcription start site region 113331
Tssr113332 12 40572804 to 40572811 7 + TSS region transcription start site region 113332
Tssr113333 12 40572831 to 40572845 14 + TSS region transcription start site region 113333
Tssr113334 12 40575616 to 40575618 2 + TSS region transcription start site region 113334
Tssr113335 12 40602273 to 40602306 33 + TSS region transcription start site region 113335
D12Mit148.1 12 40624287 to 40624397 110 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 148.1
D12Mit148 12 40624443 to 40624587 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 148
Tssr113336 12 40648280 to 40648289 9 + TSS region transcription start site region 113336
Tssr113337 12 40651990 to 40652010 20 + TSS region transcription start site region 113337
4732465E10Rik 12 40688009 to 40692090 4081 unclassified gene RIKEN cDNA 4732465E10 gene
Tssr113338 12 40695501 to 40695504 3 + TSS region transcription start site region 113338
Tssr113339 12 40712042 to 40712048 6 + TSS region transcription start site region 113339
Tssr113340 12 40718375 to 40718378 3 + TSS region transcription start site region 113340
5730420F10Rik 12 40768889 to 40770575 1686 unclassified gene RIKEN cDNA 5730420F10 gene