Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:40049259-41539271

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scin 12 40059769 to 40134228 74459 - protein coding gene scinderin
Tssr116157 12 40083428 to 40083471 43 - TSS region transcription start site region 116157
Tssr116158 12 40105004 to 40105018 14 - TSS region transcription start site region 116158
Tssr116159 12 40107108 to 40107129 21 - TSS region transcription start site region 116159
Tssr113303 12 40108368 to 40108374 6 + TSS region transcription start site region 113303
Tssr113304 12 40108412 to 40108434 22 + TSS region transcription start site region 113304
Tssr116160 12 40114127 to 40114164 37 - TSS region transcription start site region 116160
Tssr116161 12 40124662 to 40124679 17 - TSS region transcription start site region 116161
Tssr113305 12 40124753 to 40124795 42 + TSS region transcription start site region 113305
Cpgi4569 12 40133868 to 40134328 460 CpG island CpG island 4569
Tssr116162 12 40134175 to 40134190 15 - TSS region transcription start site region 116162
Lsmem1 12 40176386 to 40199315 22929 - protein coding gene leucine-rich single-pass membrane protein 1
Gm17056 12 40198656 to 40201105 2449 + antisense lncRNA gene predicted gene 17056
Tssr116163 12 40199260 to 40199266 6 - TSS region transcription start site region 116163
Tssr116164 12 40199268 to 40199312 44 - TSS region transcription start site region 116164
Tssr116165 12 40199317 to 40199331 14 - TSS region transcription start site region 116165
Tssr116166 12 40199497 to 40199511 14 - TSS region transcription start site region 116166
Tssr116167 12 40199559 to 40199572 13 - TSS region transcription start site region 116167
Tssr116168 12 40199583 to 40199596 13 - TSS region transcription start site region 116168
Tssr116169 12 40201103 to 40201110 7 - TSS region transcription start site region 116169
Ifrd1 12 40203129 to 40223189 20060 - protein coding gene interferon-related developmental regulator 1
Tssr116170 12 40203437 to 40203456 19 - TSS region transcription start site region 116170
Tssr116171 12 40204353 to 40204365 12 - TSS region transcription start site region 116171
Tssr116172 12 40205954 to 40205958 4 - TSS region transcription start site region 116172
Gm17024 12 40209487 to 40211073 1586 - sense intronic lncRNA gene predicted gene 17024
Tssr116173 12 40209668 to 40209689 21 - TSS region transcription start site region 116173
Tssr116174 12 40210545 to 40210563 18 - TSS region transcription start site region 116174
Tssr116175 12 40217179 to 40217190 11 - TSS region transcription start site region 116175
Tssr116176 12 40222105 to 40222107 2 - TSS region transcription start site region 116176
Cpgi4570 12 40222142 to 40223705 1563 CpG island CpG island 4570
Tssr113306 12 40222250 to 40222260 10 + TSS region transcription start site region 113306
Mir1938 12 40222712 to 40222811 99 - miRNA gene microRNA 1938
Tssr116177 12 40223174 to 40223192 18 - TSS region transcription start site region 116177
Tssr113307 12 40223325 to 40223350 25 + TSS region transcription start site region 113307
Tssr116178 12 40223364 to 40223382 18 - TSS region transcription start site region 116178
Gm7008 12 40223364 to 40229183 5819 + antisense lncRNA gene predicted gene 7008
Tssr113308 12 40223571 to 40223616 45 + TSS region transcription start site region 113308
Gm47954 12 40225263 to 40225782 519 - pseudogene predicted gene, 47954
Gm40403 12 40240231 to 40248136 7905 - lncRNA gene predicted gene, 40403
Tssr116179 12 40248019 to 40248067 48 - TSS region transcription start site region 116179
Tssr116180 12 40248073 to 40248086 13 - TSS region transcription start site region 116180
Tssr113309 12 40248170 to 40248196 26 + TSS region transcription start site region 113309
D12Mit61 12 40274849 to 40274963 114 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 61
Zfp277 12 40315046 to 40445790 130744 - protein coding gene zinc finger protein 277
Gm40406 12 40423731 to 40433682 9951 - lncRNA gene predicted gene, 40406
Cpgi4571 12 40445447 to 40446975 1528 CpG island CpG island 4571
Tssr116181 12 40445754 to 40445798 44 - TSS region transcription start site region 116181
Dock4 12 40445957 to 40846874 400917 + protein coding gene dedicator of cytokinesis 4
Tssr113310 12 40445993 to 40446015 22 + TSS region transcription start site region 113310
Tssr113311 12 40446050 to 40446099 49 + TSS region transcription start site region 113311
Tssr3829 12 40446119 to 40446128 9 + TSS region transcription start site region 3829
Tssr113312 12 40446148 to 40446159 11 + TSS region transcription start site region 113312
Tssr113313 12 40451025 to 40451061 36 + TSS region transcription start site region 113313
Tssr113314 12 40455034 to 40455038 4 + TSS region transcription start site region 113314
Tssr113315 12 40461121 to 40461138 17 + TSS region transcription start site region 113315
Tssr113316 12 40465178 to 40465202 24 + TSS region transcription start site region 113316
Tssr113317 12 40465212 to 40465226 14 + TSS region transcription start site region 113317
Tssr113318 12 40465649 to 40465672 23 + TSS region transcription start site region 113318
Tssr113319 12 40465727 to 40465769 42 + TSS region transcription start site region 113319
Tssr113320 12 40472718 to 40472733 15 + TSS region transcription start site region 113320
Tssr113321 12 40472867 to 40472871 4 + TSS region transcription start site region 113321
Tssr113322 12 40480757 to 40480774 17 + TSS region transcription start site region 113322
Tssr113323 12 40504182 to 40504186 4 + TSS region transcription start site region 113323
Tssr113324 12 40518910 to 40518936 26 + TSS region transcription start site region 113324
Tssr113325 12 40529621 to 40529626 5 + TSS region transcription start site region 113325
Tssr113326 12 40538838 to 40538843 5 + TSS region transcription start site region 113326
Tssr116182 12 40555113 to 40555125 12 - TSS region transcription start site region 116182
Tssr113327 12 40555700 to 40555713 13 + TSS region transcription start site region 113327
Tssr113328 12 40556242 to 40556255 13 + TSS region transcription start site region 113328
Tssr113329 12 40560240 to 40560260 20 + TSS region transcription start site region 113329
Tssr113330 12 40560265 to 40560279 14 + TSS region transcription start site region 113330
Tssr113331 12 40560390 to 40560401 11 + TSS region transcription start site region 113331
Tssr113332 12 40572804 to 40572811 7 + TSS region transcription start site region 113332
Tssr113333 12 40572831 to 40572845 14 + TSS region transcription start site region 113333
Tssr113334 12 40575616 to 40575618 2 + TSS region transcription start site region 113334
Tssr113335 12 40602273 to 40602306 33 + TSS region transcription start site region 113335
D12Mit148.1 12 40624287 to 40624397 110 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 148.1
D12Mit148 12 40624443 to 40624587 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 148
Tssr113336 12 40648280 to 40648289 9 + TSS region transcription start site region 113336
Tssr113337 12 40651990 to 40652010 20 + TSS region transcription start site region 113337
4732465E10Rik 12 40688009 to 40692090 4081 unclassified gene RIKEN cDNA 4732465E10 gene
Tssr113338 12 40695501 to 40695504 3 + TSS region transcription start site region 113338
Tssr113339 12 40712042 to 40712048 6 + TSS region transcription start site region 113339
Tssr113340 12 40718375 to 40718378 3 + TSS region transcription start site region 113340
5730420F10Rik 12 40768889 to 40770575 1686 unclassified gene RIKEN cDNA 5730420F10 gene
Tssr113341 12 40794259 to 40794271 12 + TSS region transcription start site region 113341
Tssr113342 12 40794284 to 40794298 14 + TSS region transcription start site region 113342
Cpgi4572 12 40844172 to 40844555 383 CpG island CpG island 4572
Gm19441 12 40875537 to 40875866 329 + pseudogene predicted gene, 19441
Gm7239 12 40883758 to 40884614 856 - pseudogene predicted gene 7239
Gm19220 12 40893485 to 40894287 802 + pseudogene predicted gene, 19220
Gm18246 12 40917348 to 40917917 569 + pseudogene predicted gene, 18246
Tssr3830 12 41013303 to 41013313 10 + TSS region transcription start site region 3830
Gm18954 12 41016855 to 41020252 3397 - pseudogene predicted gene, 18954
Cpgi4573 12 41023776 to 41024698 922 CpG island CpG island 4573
Immp2l 12 41024090 to 41955588 931498 + protein coding gene IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
Tssr113343 12 41024096 to 41024134 38 + TSS region transcription start site region 113343
Tssr113344 12 41024355 to 41024367 12 + TSS region transcription start site region 113344
Tssr113345 12 41024379 to 41024390 11 + TSS region transcription start site region 113345
Gm47375 12 41041824 to 41044939 3115 - antisense lncRNA gene predicted gene, 47375
Gm4274 12 41116217 to 41146574 30357 - pseudogene predicted gene 4274
Tssr113346 12 41151090 to 41151102 12 + TSS region transcription start site region 113346
Tssr113347 12 41192887 to 41192890 3 + TSS region transcription start site region 113347
Tssr113348 12 41253693 to 41253704 11 + TSS region transcription start site region 113348
Tssr113349 12 41257284 to 41257285 1 + TSS region transcription start site region 113349
Tssr113350 12 41261054 to 41261058 4 + TSS region transcription start site region 113350
Tssr113351 12 41263234 to 41263238 4 + TSS region transcription start site region 113351
Gm47376 12 41342820 to 41348090 5270 - antisense lncRNA gene predicted gene, 47376
Tssr116183 12 41348093 to 41348104 11 - TSS region transcription start site region 116183
Gm25497 12 41348441 to 41348572 131 - snoRNA gene predicted gene, 25497
D12Mit125 12 41351866 to 41352060 194 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 125
Gm47373 12 41386379 to 41391216 4837 - antisense lncRNA gene predicted gene, 47373
Tssr113352 12 41395737 to 41395742 5 + TSS region transcription start site region 113352
Gm47368 12 41405131 to 41412665 7534 - antisense lncRNA gene predicted gene, 47368
Tssr116184 12 41412640 to 41412650 10 - TSS region transcription start site region 116184
Tssr116185 12 41412655 to 41412677 22 - TSS region transcription start site region 116185
D12Mit62 12 41448690 to 41448916 226 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 62
Lrrn3 12 41451668 to 41486057 34389 - protein coding gene leucine rich repeat protein 3, neuronal
Tssr116186 12 41485944 to 41485960 16 - TSS region transcription start site region 116186
Tssr116187 12 41485980 to 41485995 15 - TSS region transcription start site region 116187
Tssr113353 12 41498937 to 41498939 2 + TSS region transcription start site region 113353