Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:39594482-40434494

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm24434 12 39621415 to 39621546 131 + snoRNA gene predicted gene, 24434
Gm18116 12 39765186 to 39765722 536 + pseudogene predicted gene, 18116
Gm4263 12 39874770 to 39875939 1169 + pseudogene predicted gene 4263
Gm47868 12 39899010 to 39922859 23849 - lincRNA gene predicted gene, 47868
Tssr113298 12 39941581 to 39941584 3 + TSS region transcription start site region 113298
Gm40399 12 39942477 to 39950626 8149 - lncRNA gene predicted gene, 40399
Gm18939 12 39948444 to 39949124 680 - pseudogene predicted gene, 18939
Tssr116148 12 39975033 to 39975037 4 - TSS region transcription start site region 116148
Bmiq11 12 40000000 to 8000000 -32000000 QTL body mass index QTL 11
Tssr116149 12 40014482 to 40014494 12 - TSS region transcription start site region 116149
Cpgi4567 12 40017100 to 40017290 190 CpG island CpG island 4567
Arl4a 12 40033291 to 40037987 4696 - protein coding gene ADP-ribosylation factor-like 4A
Cpgi4568 12 40037087 to 40038522 1435 CpG island CpG island 4568
Tssr116150 12 40037368 to 40037382 14 - TSS region transcription start site region 116150
Tssr116151 12 40037387 to 40037411 24 - TSS region transcription start site region 116151
Tssr116152 12 40037624 to 40037630 6 - TSS region transcription start site region 116152
Tssr116153 12 40037655 to 40037667 12 - TSS region transcription start site region 116153
Tssr116154 12 40037919 to 40038013 94 - TSS region transcription start site region 116154
Tssr116155 12 40038030 to 40038041 11 - TSS region transcription start site region 116155
Tssr113299 12 40038070 to 40038091 21 + TSS region transcription start site region 113299
Tssr113300 12 40038093 to 40038107 14 + TSS region transcription start site region 113300
Arl4aos 12 40038099 to 40040027 1928 + antisense lncRNA gene ADP-ribosylation factor-like 4A, opposite strand
Tssr113301 12 40038109 to 40038118 9 + TSS region transcription start site region 113301
Tssr116156 12 40038210 to 40038222 12 - TSS region transcription start site region 116156
Tssr113302 12 40038321 to 40038335 14 + TSS region transcription start site region 113302
Scin 12 40059769 to 40134228 74459 - protein coding gene scinderin
Tssr116157 12 40083428 to 40083471 43 - TSS region transcription start site region 116157
Tssr116158 12 40105004 to 40105018 14 - TSS region transcription start site region 116158
Tssr116159 12 40107108 to 40107129 21 - TSS region transcription start site region 116159
Tssr113303 12 40108368 to 40108374 6 + TSS region transcription start site region 113303
Tssr113304 12 40108412 to 40108434 22 + TSS region transcription start site region 113304
Tssr116160 12 40114127 to 40114164 37 - TSS region transcription start site region 116160
Tssr116161 12 40124662 to 40124679 17 - TSS region transcription start site region 116161
Tssr113305 12 40124753 to 40124795 42 + TSS region transcription start site region 113305
Cpgi4569 12 40133868 to 40134328 460 CpG island CpG island 4569
Tssr116162 12 40134175 to 40134190 15 - TSS region transcription start site region 116162
Lsmem1 12 40176386 to 40199315 22929 - protein coding gene leucine-rich single-pass membrane protein 1
Gm17056 12 40198656 to 40201105 2449 + antisense lncRNA gene predicted gene 17056
Tssr116163 12 40199260 to 40199266 6 - TSS region transcription start site region 116163
Tssr116164 12 40199268 to 40199312 44 - TSS region transcription start site region 116164
Tssr116165 12 40199317 to 40199331 14 - TSS region transcription start site region 116165
Tssr116166 12 40199497 to 40199511 14 - TSS region transcription start site region 116166
Tssr116167 12 40199559 to 40199572 13 - TSS region transcription start site region 116167
Tssr116168 12 40199583 to 40199596 13 - TSS region transcription start site region 116168
Tssr116169 12 40201103 to 40201110 7 - TSS region transcription start site region 116169
Ifrd1 12 40203129 to 40223189 20060 - protein coding gene interferon-related developmental regulator 1
Tssr116170 12 40203437 to 40203456 19 - TSS region transcription start site region 116170
Tssr116171 12 40204353 to 40204365 12 - TSS region transcription start site region 116171
Tssr116172 12 40205954 to 40205958 4 - TSS region transcription start site region 116172
Gm17024 12 40209487 to 40211073 1586 - sense intronic lncRNA gene predicted gene 17024
Tssr116173 12 40209668 to 40209689 21 - TSS region transcription start site region 116173
Tssr116174 12 40210545 to 40210563 18 - TSS region transcription start site region 116174
Tssr116175 12 40217179 to 40217190 11 - TSS region transcription start site region 116175
Tssr116176 12 40222105 to 40222107 2 - TSS region transcription start site region 116176
Cpgi4570 12 40222142 to 40223705 1563 CpG island CpG island 4570
Tssr113306 12 40222250 to 40222260 10 + TSS region transcription start site region 113306
Mir1938 12 40222712 to 40222811 99 - miRNA gene microRNA 1938
Tssr116177 12 40223174 to 40223192 18 - TSS region transcription start site region 116177
Tssr113307 12 40223325 to 40223350 25 + TSS region transcription start site region 113307
Gm7008 12 40223364 to 40229183 5819 + antisense lncRNA gene predicted gene 7008
Tssr116178 12 40223364 to 40223382 18 - TSS region transcription start site region 116178
Tssr113308 12 40223571 to 40223616 45 + TSS region transcription start site region 113308
Gm47954 12 40225263 to 40225782 519 - pseudogene predicted gene, 47954
Gm40403 12 40240231 to 40248136 7905 - lncRNA gene predicted gene, 40403
Tssr116179 12 40248019 to 40248067 48 - TSS region transcription start site region 116179
Tssr116180 12 40248073 to 40248086 13 - TSS region transcription start site region 116180
Tssr113309 12 40248170 to 40248196 26 + TSS region transcription start site region 113309
D12Mit61 12 40274849 to 40274963 114 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 61
Zfp277 12 40315046 to 40445790 130744 - protein coding gene zinc finger protein 277
Gm40406 12 40423731 to 40433682 9951 - lncRNA gene predicted gene, 40406