Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:3957643-5348952

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pomc 12 3954951 to 3960642 5691 + protein coding gene pro-opiomelanocortin-alpha
Cpgi4370 12 3959730 to 3960521 791 CpG island CpG island 4370
Tssr112542 12 3959996 to 3960061 65 + TSS region transcription start site region 112542
Tssr115623 12 3960439 to 3960482 43 - TSS region transcription start site region 115623
Efr3b 12 3962554 to 4038915 76361 - protein coding gene EFR3 homolog B
Tssr115624 12 3972869 to 3972877 8 - TSS region transcription start site region 115624
Cpgi4371 12 3981545 to 3982271 726 CpG island CpG island 4371
Gm48001 12 3984665 to 3985422 757 + antisense lncRNA gene predicted gene, 48001
Cpgi4372 12 4037960 to 4039289 1329 CpG island CpG island 4372
Tssr115625 12 4038774 to 4038855 81 - TSS region transcription start site region 115625
Tssr115626 12 4038868 to 4038879 11 - TSS region transcription start site region 115626
Tssr115627 12 4038905 to 4038957 52 - TSS region transcription start site region 115627
Gm48122 12 4077403 to 4077624 221 - pseudogene predicted gene, 48122
Cpgi4373 12 4082258 to 4083032 774 CpG island CpG island 4373
Tssr112543 12 4082575 to 4082594 19 + TSS region transcription start site region 112543
Dnajc27 12 4082583 to 4110606 28023 + protein coding gene DnaJ heat shock protein family (Hsp40) member C27
Tssr112544 12 4082596 to 4082638 42 + TSS region transcription start site region 112544
Tssr112545 12 4082641 to 4082652 11 + TSS region transcription start site region 112545
Cpgi4374 12 4132875 to 4134067 1192 CpG island CpG island 4374
Tssr112546 12 4133047 to 4133126 79 + TSS region transcription start site region 112546
Adcy3 12 4133103 to 4213525 80422 + protein coding gene adenylate cyclase 3
Tssr112547 12 4133394 to 4133411 17 + TSS region transcription start site region 112547
Tssr112548 12 4133421 to 4133426 5 + TSS region transcription start site region 112548
Tssr112549 12 4133510 to 4133518 8 + TSS region transcription start site region 112549
Cpgi4375 12 4134358 to 4134556 198 CpG island CpG island 4375
Gm31794 12 4144328 to 4146825 2497 - lncRNA gene predicted gene, 31794
Cenpo 12 4196004 to 4234294 38290 - protein coding gene centromere protein O
Tssr115628 12 4201519 to 4201520 1 - TSS region transcription start site region 115628
Gm48210 12 4222102 to 4223361 1259 + unclassified gene predicted gene, 48210
Tssr112550 12 4225721 to 4225730 9 + TSS region transcription start site region 112550
Gm17816 12 4225743 to 4228308 2565 + pseudogene predicted gene, 17816
Tssr112551 12 4227566 to 4227574 8 + TSS region transcription start site region 112551
Cpgi4376 12 4233628 to 4234601 973 CpG island CpG island 4376
Tssr115629 12 4233714 to 4233738 24 - TSS region transcription start site region 115629
Tssr115630 12 4233904 to 4233925 21 - TSS region transcription start site region 115630
Tssr115631 12 4233927 to 4233951 24 - TSS region transcription start site region 115631
Tssr115632 12 4233958 to 4233981 23 - TSS region transcription start site region 115632
Tssr112552 12 4234023 to 4234066 43 + TSS region transcription start site region 112552
Ptrhd1 12 4234027 to 4239950 5923 + protein coding gene peptidyl-tRNA hydrolase domain containing 1
Tssr112553 12 4234086 to 4234118 32 + TSS region transcription start site region 112553
Tssr112554 12 4234123 to 4234154 31 + TSS region transcription start site region 112554
Tssr112555 12 4234438 to 4234452 14 + TSS region transcription start site region 112555
Gm29696 12 4237712 to 4238583 871 + pseudogene predicted gene, 29696
4921501I09Rik 12 4241133 to 4247671 6538 + antisense lncRNA gene RIKEN cDNA 4921501I09 gene
Ncoa1 12 4247362 to 4477182 229820 - protein coding gene nuclear receptor coactivator 1
Tssr115633 12 4248359 to 4248362 3 - TSS region transcription start site region 115633
Gm17914 12 4333306 to 4333807 501 + pseudogene predicted gene, 17914
2610001N11Rik 12 4346010 to 4346823 813 unclassified gene RIKEN cDNA 2610001N11 gene
Gm23756 12 4347647 to 4347760 113 + rRNA gene predicted gene, 23756
Tssr115634 12 4357009 to 4357018 9 - TSS region transcription start site region 115634
Gm22343 12 4394482 to 4394767 285 + unclassified non-coding RNA gene predicted gene, 22343
Tssr3765 12 4459594 to 4459618 24 + TSS region transcription start site region 3765
Tssr3766 12 4459628 to 4459654 26 + TSS region transcription start site region 3766
Cpgi4377 12 4476010 to 4477651 1641 CpG island CpG island 4377
Tssr115635 12 4477138 to 4477196 58 - TSS region transcription start site region 115635
Tssr112556 12 4507238 to 4507240 2 + TSS region transcription start site region 112556
2900045O20Rik 12 4509317 to 4522370 13053 + lincRNA gene RIKEN cDNA 2900045O20 gene
Gm31938 12 4524113 to 4529122 5009 + lincRNA gene predicted gene, 31938
Gm46332 12 4552813 to 4569573 16760 - lincRNA gene predicted gene, 46332
Tssr115636 12 4569534 to 4569547 13 - TSS region transcription start site region 115636
Gm48610 12 4572401 to 4576756 4355 - lincRNA gene predicted gene, 48610
Gm40835 12 4589179 to 4594527 5348 - protein coding gene predicted gene, 40835
Tssr115637 12 4592511 to 4592524 13 - TSS region transcription start site region 115637
Cpgi4378 12 4592573 to 4593924 1351 CpG island CpG island 4378
Tssr112557 12 4592629 to 4592648 19 + TSS region transcription start site region 112557
Itsn2 12 4592638 to 4713962 121324 + protein coding gene intersectin 2
Tssr112558 12 4592650 to 4592673 23 + TSS region transcription start site region 112558
Tssr112559 12 4592793 to 4592836 43 + TSS region transcription start site region 112559
Gm3625 12 4592826 to 4592927 101 - unclassified gene predicted gene 3625
Tssr112560 12 4592900 to 4592945 45 + TSS region transcription start site region 112560
Tssr112561 12 4592992 to 4593087 95 + TSS region transcription start site region 112561
Tssr112562 12 4593136 to 4593147 11 + TSS region transcription start site region 112562
Tssr115638 12 4593686 to 4593695 9 - TSS region transcription start site region 115638
Tssr115639 12 4593702 to 4593736 34 - TSS region transcription start site region 115639
Tssr115640 12 4593737 to 4593753 16 - TSS region transcription start site region 115640
Tssr115641 12 4593776 to 4593790 14 - TSS region transcription start site region 115641
Tssr115642 12 4593792 to 4593812 20 - TSS region transcription start site region 115642
Tssr3767 12 4593798 to 4593832 34 + TSS region transcription start site region 3767
Tssr112563 12 4593860 to 4593864 4 + TSS region transcription start site region 112563
Tssr115643 12 4595153 to 4595156 3 - TSS region transcription start site region 115643
Gm48678 12 4595340 to 4655888 60548 - antisense lncRNA gene predicted gene, 48678
Tssr112564 12 4598891 to 4598930 39 + TSS region transcription start site region 112564
Tssr112565 12 4599744 to 4599774 30 + TSS region transcription start site region 112565
Tssr112566 12 4600240 to 4600246 6 + TSS region transcription start site region 112566
Tssr112567 12 4600662 to 4600664 2 + TSS region transcription start site region 112567
Tssr112568 12 4601975 to 4601978 3 + TSS region transcription start site region 112568
Tssr112569 12 4624894 to 4624916 22 + TSS region transcription start site region 112569
Tssr112570 12 4629903 to 4629921 18 + TSS region transcription start site region 112570
Tssr112571 12 4633477 to 4633495 18 + TSS region transcription start site region 112571
Tssr112572 12 4634620 to 4634643 23 + TSS region transcription start site region 112572
Tssr112573 12 4635589 to 4635610 21 + TSS region transcription start site region 112573
Tssr112574 12 4635613 to 4635629 16 + TSS region transcription start site region 112574
Gm17541 12 4689405 to 4689917 512 - pseudogene predicted gene, 17541
Tssr115644 12 4689951 to 4689955 4 - TSS region transcription start site region 115644
Tssr112575 12 4703231 to 4703235 4 + TSS region transcription start site region 112575
Tssr115645 12 4712215 to 4712258 43 - TSS region transcription start site region 115645
Tssr112576 12 4712336 to 4712343 7 + TSS region transcription start site region 112576
Tssr112577 12 4712355 to 4712377 22 + TSS region transcription start site region 112577
Fam228a 12 4713670 to 4738430 24760 - protein coding gene family with sequence similarity 228, member A
Cpgi4379 12 4738100 to 4738488 388 CpG island CpG island 4379
Tssr115646 12 4738349 to 4738356 7 - TSS region transcription start site region 115646
Tssr115647 12 4738375 to 4738388 13 - TSS region transcription start site region 115647
Tssr115648 12 4738411 to 4738444 33 - TSS region transcription start site region 115648
Fam228b 12 4739888 to 4769267 29379 - protein coding gene family with sequence similarity 228, member B
Gm23676 12 4749752 to 4749856 104 + snRNA gene predicted gene, 23676
Gm22003 12 4758547 to 4758653 106 + snRNA gene predicted gene, 22003
Cpgi4380 12 4768754 to 4769522 768 CpG island CpG island 4380
Tssr115649 12 4769039 to 4769051 12 - TSS region transcription start site region 115649
Tssr115650 12 4769070 to 4769088 18 - TSS region transcription start site region 115650
Tssr3768 12 4769100 to 4769107 7 + TSS region transcription start site region 3768
Tssr112578 12 4769118 to 4769125 7 + TSS region transcription start site region 112578
Tssr112579 12 4769127 to 4769138 11 + TSS region transcription start site region 112579
Tssr112580 12 4769151 to 4769165 14 + TSS region transcription start site region 112580
Pfn4 12 4769167 to 4778808 9641 + protein coding gene profilin family, member 4
Tssr115651 12 4769217 to 4769267 50 - TSS region transcription start site region 115651
Tssr112581 12 4769278 to 4769338 60 + TSS region transcription start site region 112581
Tssr112582 12 4769340 to 4769360 20 + TSS region transcription start site region 112582
Tssr112583 12 4769375 to 4769386 11 + TSS region transcription start site region 112583
Tssr112584 12 4780476 to 4780511 35 + TSS region transcription start site region 112584
Tssr112585 12 4782060 to 4782068 8 + TSS region transcription start site region 112585
Tssr112586 12 4782136 to 4782154 18 + TSS region transcription start site region 112586
Gm6682 12 4782170 to 4783515 1345 + pseudogene predicted gene 6682
Gm20348 12 4810475 to 4817155 6680 + pseudogene predicted gene, 20348
Cpgi4381 12 4817151 to 4818024 873 CpG island CpG island 4381
Tssr112587 12 4817545 to 4817578 33 + TSS region transcription start site region 112587
Sf3b6 12 4817608 to 4827659 10051 + protein coding gene splicing factor 3B, subunit 6
Tssr112588 12 4817661 to 4817672 11 + TSS region transcription start site region 112588
Tssr115652 12 4829435 to 4829485 50 - TSS region transcription start site region 115652
Fkbp1b 12 4833174 to 4841591 8417 - protein coding gene FK506 binding protein 1b
Cpgi4382 12 4841011 to 4841837 826 CpG island CpG island 4382
Tssr115653 12 4841537 to 4841580 43 - TSS region transcription start site region 115653
Tssr115654 12 4841583 to 4841611 28 - TSS region transcription start site region 115654
Cpgi4383 12 4843145 to 4843590 445 CpG island CpG island 4383
Wdcp 12 4843303 to 4860043 16740 + protein coding gene WD repeat and coiled coil containing
Tssr112589 12 4843316 to 4843419 103 + TSS region transcription start site region 112589
Cpgi4384 12 4843870 to 4844047 177 CpG island CpG island 4384
Tssr3769 12 4850722 to 4850726 4 + TSS region transcription start site region 3769
Mfsd2b 12 4862440 to 4874359 11919 - protein coding gene major facilitator superfamily domain containing 2B
Cpgi4385 12 4874154 to 4874516 362 CpG island CpG island 4385
Tssr115655 12 4874341 to 4874367 26 - TSS region transcription start site region 115655
Ubxn2a 12 4879032 to 4907705 28673 - protein coding gene UBX domain protein 2A
Cpgi4386 12 4906930 to 4907932 1002 CpG island CpG island 4386
Tssr115656 12 4907229 to 4907257 28 - TSS region transcription start site region 115656
Tssr115657 12 4907393 to 4907402 9 - TSS region transcription start site region 115657
Tssr115658 12 4907474 to 4907533 59 - TSS region transcription start site region 115658
Tssr115659 12 4907538 to 4907558 20 - TSS region transcription start site region 115659
Tssr115660 12 4907566 to 4907584 18 - TSS region transcription start site region 115660
Tssr115661 12 4907600 to 4907609 9 - TSS region transcription start site region 115661
Tssr115662 12 4907739 to 4907754 15 - TSS region transcription start site region 115662
Tssr112590 12 4907810 to 4907824 14 + TSS region transcription start site region 112590
Tssr115663 12 4910489 to 4910495 6 - TSS region transcription start site region 115663
Tssr115664 12 4916133 to 4916140 7 - TSS region transcription start site region 115664
Tssr115665 12 4916177 to 4916184 7 - TSS region transcription start site region 115665
Tssr115666 12 4916198 to 4916220 22 - TSS region transcription start site region 115666
Tssr115667 12 4916537 to 4916552 15 - TSS region transcription start site region 115667
Tssr115668 12 4916688 to 4916729 41 - TSS region transcription start site region 115668
Cpgi4387 12 4916898 to 4918241 1343 CpG island CpG island 4387
Tssr115669 12 4917006 to 4917015 9 - TSS region transcription start site region 115669
Tssr112591 12 4917300 to 4917307 7 + TSS region transcription start site region 112591
Tssr112592 12 4917332 to 4917343 11 + TSS region transcription start site region 112592
Tssr112593 12 4917346 to 4917370 24 + TSS region transcription start site region 112593
Atad2b 12 4917353 to 5047394 130041 + protein coding gene ATPase family, AAA domain containing 2B
Tssr112594 12 4917376 to 4917438 62 + TSS region transcription start site region 112594
Tssr115670 12 4918102 to 4918107 5 - TSS region transcription start site region 115670
Tssr115671 12 4918139 to 4918150 11 - TSS region transcription start site region 115671
Tssr115672 12 4918163 to 4918182 19 - TSS region transcription start site region 115672
Tssr115673 12 4918186 to 4918196 10 - TSS region transcription start site region 115673
Tssr115674 12 4918230 to 4918249 19 - TSS region transcription start site region 115674
Tssr115675 12 4918273 to 4918284 11 - TSS region transcription start site region 115675
Tssr112595 12 4944912 to 4944933 21 + TSS region transcription start site region 112595
Tssr112596 12 4956669 to 4956673 4 + TSS region transcription start site region 112596
Tssr115676 12 4996803 to 4996809 6 - TSS region transcription start site region 115676
Gm23167 12 4999266 to 4999368 102 - snRNA gene predicted gene, 23167
Gm9110 12 5066832 to 5067448 616 - pseudogene predicted gene 9110
Klhl29 12 5077472 to 5375682 298210 - protein coding gene kelch-like 29
D12Mit135 12 5099373 to 5099492 119 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 135
Tssr115677 12 5201121 to 5201123 2 - TSS region transcription start site region 115677
Gm48532 12 5235156 to 5235964 808 - unclassified gene predicted gene, 48532
Tssr115678 12 5246840 to 5246870 30 - TSS region transcription start site region 115678
D12Mit264 12 5305176 to 5305297 121 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 264
Tssr115679 12 5334637 to 5334641 4 - TSS region transcription start site region 115679