Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:3907009-4807018

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnmt3a 12 3806007 to 3914443 108436 + protein coding gene DNA methyltransferase 3A
Tssr112535 12 3907602 to 3907619 17 + TSS region transcription start site region 112535
Tssr112536 12 3907673 to 3907705 32 + TSS region transcription start site region 112536
Tssr112537 12 3907746 to 3907766 20 + TSS region transcription start site region 112537
Tssr115622 12 3907835 to 3907855 20 - TSS region transcription start site region 115622
Tssr112538 12 3908220 to 3908229 9 + TSS region transcription start site region 112538
Tssr112539 12 3913160 to 3913183 23 + TSS region transcription start site region 112539
Tssr112540 12 3913394 to 3913414 20 + TSS region transcription start site region 112540
D12Mit1000 12 3917243 to 3917392 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1000
Cpgi4366 12 3930101 to 3930276 175 CpG island CpG island 4366
Cpgi4367 12 3930584 to 3931055 471 CpG island CpG island 4367
Gm9088 12 3931533 to 3932040 507 - pseudogene predicted gene 9088
Cpgi4368 12 3942308 to 3942783 475 CpG island CpG island 4368
Cpgi4369 12 3954642 to 3954964 322 CpG island CpG island 4369
Tssr112541 12 3954943 to 3954957 14 + TSS region transcription start site region 112541
Pomc 12 3954951 to 3960642 5691 + protein coding gene pro-opiomelanocortin-alpha
Cpgi4370 12 3959730 to 3960521 791 CpG island CpG island 4370
Tssr112542 12 3959996 to 3960061 65 + TSS region transcription start site region 112542
Tssr115623 12 3960439 to 3960482 43 - TSS region transcription start site region 115623
Efr3b 12 3962554 to 4038915 76361 - protein coding gene EFR3 homolog B
Tssr115624 12 3972869 to 3972877 8 - TSS region transcription start site region 115624
Cpgi4371 12 3981545 to 3982271 726 CpG island CpG island 4371
Gm48001 12 3984665 to 3985422 757 + antisense lncRNA gene predicted gene, 48001
Cpgi4372 12 4037960 to 4039289 1329 CpG island CpG island 4372
Tssr115625 12 4038774 to 4038855 81 - TSS region transcription start site region 115625
Tssr115626 12 4038868 to 4038879 11 - TSS region transcription start site region 115626
Tssr115627 12 4038905 to 4038957 52 - TSS region transcription start site region 115627
Gm48122 12 4077403 to 4077624 221 - pseudogene predicted gene, 48122
Cpgi4373 12 4082258 to 4083032 774 CpG island CpG island 4373
Tssr112543 12 4082575 to 4082594 19 + TSS region transcription start site region 112543
Dnajc27 12 4082583 to 4110606 28023 + protein coding gene DnaJ heat shock protein family (Hsp40) member C27
Tssr112544 12 4082596 to 4082638 42 + TSS region transcription start site region 112544
Tssr112545 12 4082641 to 4082652 11 + TSS region transcription start site region 112545
Cpgi4374 12 4132875 to 4134067 1192 CpG island CpG island 4374
Tssr112546 12 4133047 to 4133126 79 + TSS region transcription start site region 112546
Adcy3 12 4133103 to 4213525 80422 + protein coding gene adenylate cyclase 3
Tssr112547 12 4133394 to 4133411 17 + TSS region transcription start site region 112547
Tssr112548 12 4133421 to 4133426 5 + TSS region transcription start site region 112548
Tssr112549 12 4133510 to 4133518 8 + TSS region transcription start site region 112549
Cpgi4375 12 4134358 to 4134556 198 CpG island CpG island 4375
Gm31794 12 4144328 to 4146825 2497 - lncRNA gene predicted gene, 31794
Cenpo 12 4196004 to 4234294 38290 - protein coding gene centromere protein O
Tssr115628 12 4201519 to 4201520 1 - TSS region transcription start site region 115628
Gm48210 12 4222102 to 4223361 1259 + unclassified gene predicted gene, 48210
Tssr112550 12 4225721 to 4225730 9 + TSS region transcription start site region 112550
Gm17816 12 4225743 to 4228308 2565 + pseudogene predicted gene, 17816
Tssr112551 12 4227566 to 4227574 8 + TSS region transcription start site region 112551
Cpgi4376 12 4233628 to 4234601 973 CpG island CpG island 4376
Tssr115629 12 4233714 to 4233738 24 - TSS region transcription start site region 115629
Tssr115630 12 4233904 to 4233925 21 - TSS region transcription start site region 115630
Tssr115631 12 4233927 to 4233951 24 - TSS region transcription start site region 115631
Tssr115632 12 4233958 to 4233981 23 - TSS region transcription start site region 115632
Tssr112552 12 4234023 to 4234066 43 + TSS region transcription start site region 112552
Ptrhd1 12 4234027 to 4239950 5923 + protein coding gene peptidyl-tRNA hydrolase domain containing 1
Tssr112553 12 4234086 to 4234118 32 + TSS region transcription start site region 112553
Tssr112554 12 4234123 to 4234154 31 + TSS region transcription start site region 112554
Tssr112555 12 4234438 to 4234452 14 + TSS region transcription start site region 112555
Gm29696 12 4237712 to 4238583 871 + pseudogene predicted gene, 29696
4921501I09Rik 12 4241133 to 4247671 6538 + antisense lncRNA gene RIKEN cDNA 4921501I09 gene
Ncoa1 12 4247362 to 4477182 229820 - protein coding gene nuclear receptor coactivator 1
Tssr115633 12 4248359 to 4248362 3 - TSS region transcription start site region 115633
Gm17914 12 4333306 to 4333807 501 + pseudogene predicted gene, 17914
2610001N11Rik 12 4346010 to 4346823 813 unclassified gene RIKEN cDNA 2610001N11 gene
Gm23756 12 4347647 to 4347760 113 + rRNA gene predicted gene, 23756
Tssr115634 12 4357009 to 4357018 9 - TSS region transcription start site region 115634
Gm22343 12 4394482 to 4394767 285 + unclassified non-coding RNA gene predicted gene, 22343
Tssr3765 12 4459594 to 4459618 24 + TSS region transcription start site region 3765
Tssr3766 12 4459628 to 4459654 26 + TSS region transcription start site region 3766
Cpgi4377 12 4476010 to 4477651 1641 CpG island CpG island 4377
Tssr115635 12 4477138 to 4477196 58 - TSS region transcription start site region 115635
Tssr112556 12 4507238 to 4507240 2 + TSS region transcription start site region 112556
2900045O20Rik 12 4509317 to 4522370 13053 + lincRNA gene RIKEN cDNA 2900045O20 gene
Gm31938 12 4524113 to 4529122 5009 + lincRNA gene predicted gene, 31938
Gm46332 12 4552813 to 4569573 16760 - lincRNA gene predicted gene, 46332
Tssr115636 12 4569534 to 4569547 13 - TSS region transcription start site region 115636
Gm48610 12 4572401 to 4576756 4355 - lincRNA gene predicted gene, 48610
Gm40835 12 4589179 to 4594527 5348 - protein coding gene predicted gene, 40835
Tssr115637 12 4592511 to 4592524 13 - TSS region transcription start site region 115637
Cpgi4378 12 4592573 to 4593924 1351 CpG island CpG island 4378
Tssr112557 12 4592629 to 4592648 19 + TSS region transcription start site region 112557
Itsn2 12 4592638 to 4713962 121324 + protein coding gene intersectin 2
Tssr112558 12 4592650 to 4592673 23 + TSS region transcription start site region 112558
Tssr112559 12 4592793 to 4592836 43 + TSS region transcription start site region 112559
Gm3625 12 4592826 to 4592927 101 - unclassified gene predicted gene 3625
Tssr112560 12 4592900 to 4592945 45 + TSS region transcription start site region 112560
Tssr112561 12 4592992 to 4593087 95 + TSS region transcription start site region 112561
Tssr112562 12 4593136 to 4593147 11 + TSS region transcription start site region 112562
Tssr115638 12 4593686 to 4593695 9 - TSS region transcription start site region 115638
Tssr115639 12 4593702 to 4593736 34 - TSS region transcription start site region 115639
Tssr115640 12 4593737 to 4593753 16 - TSS region transcription start site region 115640
Tssr115641 12 4593776 to 4593790 14 - TSS region transcription start site region 115641
Tssr115642 12 4593792 to 4593812 20 - TSS region transcription start site region 115642
Tssr3767 12 4593798 to 4593832 34 + TSS region transcription start site region 3767
Tssr112563 12 4593860 to 4593864 4 + TSS region transcription start site region 112563
Tssr115643 12 4595153 to 4595156 3 - TSS region transcription start site region 115643
Gm48678 12 4595340 to 4655888 60548 - antisense lncRNA gene predicted gene, 48678
Tssr112564 12 4598891 to 4598930 39 + TSS region transcription start site region 112564
Tssr112565 12 4599744 to 4599774 30 + TSS region transcription start site region 112565
Tssr112566 12 4600240 to 4600246 6 + TSS region transcription start site region 112566
Tssr112567 12 4600662 to 4600664 2 + TSS region transcription start site region 112567
Tssr112568 12 4601975 to 4601978 3 + TSS region transcription start site region 112568
Tssr112569 12 4624894 to 4624916 22 + TSS region transcription start site region 112569
Tssr112570 12 4629903 to 4629921 18 + TSS region transcription start site region 112570
Tssr112571 12 4633477 to 4633495 18 + TSS region transcription start site region 112571
Tssr112572 12 4634620 to 4634643 23 + TSS region transcription start site region 112572
Tssr112573 12 4635589 to 4635610 21 + TSS region transcription start site region 112573
Tssr112574 12 4635613 to 4635629 16 + TSS region transcription start site region 112574
Gm17541 12 4689405 to 4689917 512 - pseudogene predicted gene, 17541
Tssr115644 12 4689951 to 4689955 4 - TSS region transcription start site region 115644
Tssr112575 12 4703231 to 4703235 4 + TSS region transcription start site region 112575
Tssr115645 12 4712215 to 4712258 43 - TSS region transcription start site region 115645
Tssr112576 12 4712336 to 4712343 7 + TSS region transcription start site region 112576
Tssr112577 12 4712355 to 4712377 22 + TSS region transcription start site region 112577
Fam228a 12 4713670 to 4738430 24760 - protein coding gene family with sequence similarity 228, member A
Cpgi4379 12 4738100 to 4738488 388 CpG island CpG island 4379
Tssr115646 12 4738349 to 4738356 7 - TSS region transcription start site region 115646
Tssr115647 12 4738375 to 4738388 13 - TSS region transcription start site region 115647
Tssr115648 12 4738411 to 4738444 33 - TSS region transcription start site region 115648
Fam228b 12 4739888 to 4769267 29379 - protein coding gene family with sequence similarity 228, member B
Gm23676 12 4749752 to 4749856 104 + snRNA gene predicted gene, 23676
Gm22003 12 4758547 to 4758653 106 + snRNA gene predicted gene, 22003
Cpgi4380 12 4768754 to 4769522 768 CpG island CpG island 4380
Tssr115649 12 4769039 to 4769051 12 - TSS region transcription start site region 115649
Tssr115650 12 4769070 to 4769088 18 - TSS region transcription start site region 115650
Tssr3768 12 4769100 to 4769107 7 + TSS region transcription start site region 3768
Tssr112578 12 4769118 to 4769125 7 + TSS region transcription start site region 112578
Tssr112579 12 4769127 to 4769138 11 + TSS region transcription start site region 112579
Tssr112580 12 4769151 to 4769165 14 + TSS region transcription start site region 112580
Pfn4 12 4769167 to 4778808 9641 + protein coding gene profilin family, member 4
Tssr115651 12 4769217 to 4769267 50 - TSS region transcription start site region 115651
Tssr112581 12 4769278 to 4769338 60 + TSS region transcription start site region 112581
Tssr112582 12 4769340 to 4769360 20 + TSS region transcription start site region 112582
Tssr112583 12 4769375 to 4769386 11 + TSS region transcription start site region 112583
Tssr112584 12 4780476 to 4780511 35 + TSS region transcription start site region 112584
Tssr112585 12 4782060 to 4782068 8 + TSS region transcription start site region 112585
Tssr112586 12 4782136 to 4782154 18 + TSS region transcription start site region 112586
Gm6682 12 4782170 to 4783515 1345 + pseudogene predicted gene 6682