Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:38736415-40506546

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm4257 12 38741701 to 38742210 509 - pseudogene predicted gene 4257
D12Mit186 12 38777282 to 38777408 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 186
D12Mit222 12 38777282 to 38777393 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 222
Cpgi4566 12 38778552 to 38779139 587 CpG island CpG island 4566
Etv1 12 38779656 to 38868215 88559 + protein coding gene ets variant 1
Tssr113280 12 38780104 to 38780117 13 + TSS region transcription start site region 113280
Tssr113281 12 38780254 to 38780261 7 + TSS region transcription start site region 113281
Tssr113282 12 38780286 to 38780326 40 + TSS region transcription start site region 113282
Tssr113283 12 38780817 to 38780854 37 + TSS region transcription start site region 113283
Tssr3827 12 38781073 to 38781088 15 + TSS region transcription start site region 3827
Tssr113284 12 38781093 to 38781128 35 + TSS region transcription start site region 113284
Tssr3828 12 38783417 to 38783420 3 + TSS region transcription start site region 3828
Tssr113285 12 38783455 to 38783482 27 + TSS region transcription start site region 113285
Tssr113286 12 38783488 to 38783495 7 + TSS region transcription start site region 113286
Tssr113287 12 38783503 to 38783527 24 + TSS region transcription start site region 113287
Tssr113288 12 38783619 to 38783662 43 + TSS region transcription start site region 113288
Tssr113289 12 38783673 to 38783684 11 + TSS region transcription start site region 113289
Tssr113290 12 38783703 to 38783722 19 + TSS region transcription start site region 113290
Tssr113291 12 38784367 to 38784411 44 + TSS region transcription start site region 113291
Tssr113292 12 38829753 to 38829757 4 + TSS region transcription start site region 113292
Tssr113293 12 38861017 to 38861026 9 + TSS region transcription start site region 113293
Tssr113294 12 38861027 to 38861066 39 + TSS region transcription start site region 113294
Tssr113295 12 38868024 to 38868039 15 + TSS region transcription start site region 113295
Tssr113296 12 38868151 to 38868158 7 + TSS region transcription start site region 113296
Gm18442 12 38875450 to 38876024 574 + pseudogene predicted gene, 18442
Gm34611 12 38906055 to 38906953 898 - lincRNA gene predicted gene, 34611
Gm47832 12 38936413 to 38937049 636 - pseudogene predicted gene, 47832
Gm34662 12 38982438 to 38984000 1562 - lincRNA gene predicted gene, 34662
Tssr113297 12 38998542 to 38998546 4 + TSS region transcription start site region 113297
Gm19563 12 38998654 to 38998923 269 + pseudogene predicted gene, 19563
Tssr116147 12 39006943 to 39006951 8 - TSS region transcription start site region 116147
Gm34809 12 39074465 to 39154735 80270 - lincRNA gene predicted gene, 34809
Skts5 12 39098867 to 39099017 150 QTL skin tumor susceptibility 5
D12Mit154 12 39098867 to 39099017 150 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 154
Gm18591 12 39208892 to 39209654 762 + pseudogene predicted gene, 18591
Gm47855 12 39397653 to 39398556 903 - lincRNA gene predicted gene, 47855
Gm24069 12 39461530 to 39461656 126 + snoRNA gene predicted gene, 24069
Gm34923 12 39490689 to 39526901 36212 - lincRNA gene predicted gene, 34923
Gm47859 12 39515934 to 39521395 5461 - lincRNA gene predicted gene, 47859
Gm24434 12 39621415 to 39621546 131 + snoRNA gene predicted gene, 24434
Gm18116 12 39765186 to 39765722 536 + pseudogene predicted gene, 18116
Gm4263 12 39874770 to 39875939 1169 + pseudogene predicted gene 4263
Gm47868 12 39899010 to 39922859 23849 - lincRNA gene predicted gene, 47868
Tssr113298 12 39941581 to 39941584 3 + TSS region transcription start site region 113298
Gm40399 12 39942477 to 39950626 8149 - lncRNA gene predicted gene, 40399
Gm18939 12 39948444 to 39949124 680 - pseudogene predicted gene, 18939
Tssr116148 12 39975033 to 39975037 4 - TSS region transcription start site region 116148
Bmiq11 12 40000000 to 8000000 -32000000 QTL body mass index QTL 11
Tssr116149 12 40014482 to 40014494 12 - TSS region transcription start site region 116149
Cpgi4567 12 40017100 to 40017290 190 CpG island CpG island 4567
Arl4a 12 40033291 to 40037987 4696 - protein coding gene ADP-ribosylation factor-like 4A
Cpgi4568 12 40037087 to 40038522 1435 CpG island CpG island 4568
Tssr116150 12 40037368 to 40037382 14 - TSS region transcription start site region 116150
Tssr116151 12 40037387 to 40037411 24 - TSS region transcription start site region 116151
Tssr116152 12 40037624 to 40037630 6 - TSS region transcription start site region 116152
Tssr116153 12 40037655 to 40037667 12 - TSS region transcription start site region 116153
Tssr116154 12 40037919 to 40038013 94 - TSS region transcription start site region 116154
Tssr116155 12 40038030 to 40038041 11 - TSS region transcription start site region 116155
Tssr113299 12 40038070 to 40038091 21 + TSS region transcription start site region 113299
Tssr113300 12 40038093 to 40038107 14 + TSS region transcription start site region 113300
Arl4aos 12 40038099 to 40040027 1928 + antisense lncRNA gene ADP-ribosylation factor-like 4A, opposite strand
Tssr113301 12 40038109 to 40038118 9 + TSS region transcription start site region 113301
Tssr116156 12 40038210 to 40038222 12 - TSS region transcription start site region 116156
Tssr113302 12 40038321 to 40038335 14 + TSS region transcription start site region 113302
Scin 12 40059769 to 40134228 74459 - protein coding gene scinderin
Tssr116157 12 40083428 to 40083471 43 - TSS region transcription start site region 116157
Tssr116158 12 40105004 to 40105018 14 - TSS region transcription start site region 116158
Tssr116159 12 40107108 to 40107129 21 - TSS region transcription start site region 116159
Tssr113303 12 40108368 to 40108374 6 + TSS region transcription start site region 113303
Tssr113304 12 40108412 to 40108434 22 + TSS region transcription start site region 113304
Tssr116160 12 40114127 to 40114164 37 - TSS region transcription start site region 116160
Tssr116161 12 40124662 to 40124679 17 - TSS region transcription start site region 116161
Tssr113305 12 40124753 to 40124795 42 + TSS region transcription start site region 113305
Cpgi4569 12 40133868 to 40134328 460 CpG island CpG island 4569
Tssr116162 12 40134175 to 40134190 15 - TSS region transcription start site region 116162
Lsmem1 12 40176386 to 40199315 22929 - protein coding gene leucine-rich single-pass membrane protein 1
Gm17056 12 40198656 to 40201105 2449 + antisense lncRNA gene predicted gene 17056
Tssr116163 12 40199260 to 40199266 6 - TSS region transcription start site region 116163
Tssr116164 12 40199268 to 40199312 44 - TSS region transcription start site region 116164
Tssr116165 12 40199317 to 40199331 14 - TSS region transcription start site region 116165
Tssr116166 12 40199497 to 40199511 14 - TSS region transcription start site region 116166
Tssr116167 12 40199559 to 40199572 13 - TSS region transcription start site region 116167
Tssr116168 12 40199583 to 40199596 13 - TSS region transcription start site region 116168
Tssr116169 12 40201103 to 40201110 7 - TSS region transcription start site region 116169
Ifrd1 12 40203129 to 40223189 20060 - protein coding gene interferon-related developmental regulator 1
Tssr116170 12 40203437 to 40203456 19 - TSS region transcription start site region 116170
Tssr116171 12 40204353 to 40204365 12 - TSS region transcription start site region 116171
Tssr116172 12 40205954 to 40205958 4 - TSS region transcription start site region 116172
Gm17024 12 40209487 to 40211073 1586 - sense intronic lncRNA gene predicted gene 17024
Tssr116173 12 40209668 to 40209689 21 - TSS region transcription start site region 116173
Tssr116174 12 40210545 to 40210563 18 - TSS region transcription start site region 116174
Tssr116175 12 40217179 to 40217190 11 - TSS region transcription start site region 116175
Tssr116176 12 40222105 to 40222107 2 - TSS region transcription start site region 116176
Cpgi4570 12 40222142 to 40223705 1563 CpG island CpG island 4570
Tssr113306 12 40222250 to 40222260 10 + TSS region transcription start site region 113306
Mir1938 12 40222712 to 40222811 99 - miRNA gene microRNA 1938
Tssr116177 12 40223174 to 40223192 18 - TSS region transcription start site region 116177
Tssr113307 12 40223325 to 40223350 25 + TSS region transcription start site region 113307
Tssr116178 12 40223364 to 40223382 18 - TSS region transcription start site region 116178
Gm7008 12 40223364 to 40229183 5819 + antisense lncRNA gene predicted gene 7008
Tssr113308 12 40223571 to 40223616 45 + TSS region transcription start site region 113308
Gm47954 12 40225263 to 40225782 519 - pseudogene predicted gene, 47954
Gm40403 12 40240231 to 40248136 7905 - lncRNA gene predicted gene, 40403
Tssr116179 12 40248019 to 40248067 48 - TSS region transcription start site region 116179
Tssr116180 12 40248073 to 40248086 13 - TSS region transcription start site region 116180
Tssr113309 12 40248170 to 40248196 26 + TSS region transcription start site region 113309
D12Mit61 12 40274849 to 40274963 114 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 61
Zfp277 12 40315046 to 40445790 130744 - protein coding gene zinc finger protein 277
Gm40406 12 40423731 to 40433682 9951 - lncRNA gene predicted gene, 40406
Cpgi4571 12 40445447 to 40446975 1528 CpG island CpG island 4571
Tssr116181 12 40445754 to 40445798 44 - TSS region transcription start site region 116181
Dock4 12 40445957 to 40846874 400917 + protein coding gene dedicator of cytokinesis 4
Tssr113310 12 40445993 to 40446015 22 + TSS region transcription start site region 113310
Tssr113311 12 40446050 to 40446099 49 + TSS region transcription start site region 113311
Tssr3829 12 40446119 to 40446128 9 + TSS region transcription start site region 3829
Tssr113312 12 40446148 to 40446159 11 + TSS region transcription start site region 113312
Tssr113313 12 40451025 to 40451061 36 + TSS region transcription start site region 113313
Tssr113314 12 40455034 to 40455038 4 + TSS region transcription start site region 113314
Tssr113315 12 40461121 to 40461138 17 + TSS region transcription start site region 113315
Tssr113316 12 40465178 to 40465202 24 + TSS region transcription start site region 113316
Tssr113317 12 40465212 to 40465226 14 + TSS region transcription start site region 113317
Tssr113318 12 40465649 to 40465672 23 + TSS region transcription start site region 113318
Tssr113319 12 40465727 to 40465769 42 + TSS region transcription start site region 113319
Tssr113320 12 40472718 to 40472733 15 + TSS region transcription start site region 113320
Tssr113321 12 40472867 to 40472871 4 + TSS region transcription start site region 113321
Tssr113322 12 40480757 to 40480774 17 + TSS region transcription start site region 113322
Tssr113323 12 40504182 to 40504186 4 + TSS region transcription start site region 113323