Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:3801308-3981358

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4362 12 3805916 to 3808856 2940 CpG island CpG island 4362
Tssr112499 12 3806003 to 3806031 28 + TSS region transcription start site region 112499
Dnmt3a 12 3806007 to 3914443 108436 + protein coding gene DNA methyltransferase 3A
Tssr112500 12 3806513 to 3806527 14 + TSS region transcription start site region 112500
Tssr112501 12 3806536 to 3806571 35 + TSS region transcription start site region 112501
Tssr112502 12 3806962 to 3806973 11 + TSS region transcription start site region 112502
Tssr112503 12 3807001 to 3807016 15 + TSS region transcription start site region 112503
Tssr112504 12 3807017 to 3807063 46 + TSS region transcription start site region 112504
Tssr112505 12 3807076 to 3807086 10 + TSS region transcription start site region 112505
Tssr112506 12 3826578 to 3826591 13 + TSS region transcription start site region 112506
Tssr112507 12 3826623 to 3826635 12 + TSS region transcription start site region 112507
Tssr115612 12 3834578 to 3834589 11 - TSS region transcription start site region 115612
Tssr112508 12 3834789 to 3834813 24 + TSS region transcription start site region 112508
Tssr112509 12 3834817 to 3834843 26 + TSS region transcription start site region 112509
Tssr112510 12 3834850 to 3834864 14 + TSS region transcription start site region 112510
Tssr112511 12 3834874 to 3834877 3 + TSS region transcription start site region 112511
Tssr112512 12 3834893 to 3834900 7 + TSS region transcription start site region 112512
Tssr115613 12 3835640 to 3835689 49 - TSS region transcription start site region 115613
Tssr115614 12 3856052 to 3856070 18 - TSS region transcription start site region 115614
Tssr115615 12 3856165 to 3856170 5 - TSS region transcription start site region 115615
Tssr112513 12 3856330 to 3856350 20 + TSS region transcription start site region 112513
Tssr112514 12 3856395 to 3856411 16 + TSS region transcription start site region 112514
Dnmt3aos 12 3859293 to 3862244 2951 - antisense lncRNA gene DNA methyltransferase 3A, opposite strand
Tssr112515 12 3860980 to 3860998 18 + TSS region transcription start site region 112515
Tssr112516 12 3861004 to 3861028 24 + TSS region transcription start site region 112516
Tssr115616 12 3862204 to 3862220 16 - TSS region transcription start site region 115616
Tssr115617 12 3862234 to 3862256 22 - TSS region transcription start site region 115617
Tssr115618 12 3862305 to 3862316 11 - TSS region transcription start site region 115618
Tssr115619 12 3862331 to 3862342 11 - TSS region transcription start site region 115619
Tssr112517 12 3865112 to 3865119 7 + TSS region transcription start site region 112517
Cpgi4363 12 3871107 to 3871389 282 CpG island CpG island 4363
Tssr112518 12 3871355 to 3871364 9 + TSS region transcription start site region 112518
Tssr115620 12 3872958 to 3872971 13 - TSS region transcription start site region 115620
Tssr112519 12 3873084 to 3873101 17 + TSS region transcription start site region 112519
Tssr112520 12 3873103 to 3873120 17 + TSS region transcription start site region 112520
Tssr112521 12 3873135 to 3873145 10 + TSS region transcription start site region 112521
Tssr112522 12 3873165 to 3873175 10 + TSS region transcription start site region 112522
Gm31623 12 3879385 to 3894596 15211 - lncRNA gene predicted gene, 31623
Tssr112523 12 3886008 to 3886013 5 + TSS region transcription start site region 112523
Cpgi4364 12 3891214 to 3891428 214 CpG island CpG island 4364
Tssr112524 12 3891308 to 3891358 50 + TSS region transcription start site region 112524
Tssr112525 12 3891753 to 3891801 48 + TSS region transcription start site region 112525
Tssr112526 12 3891810 to 3891829 19 + TSS region transcription start site region 112526
Cpgi4365 12 3891873 to 3892124 251 CpG island CpG island 4365
Tssr115621 12 3894639 to 3894660 21 - TSS region transcription start site region 115621
Tssr112527 12 3894798 to 3894864 66 + TSS region transcription start site region 112527
Tssr112528 12 3894881 to 3894896 15 + TSS region transcription start site region 112528
Tssr112529 12 3895468 to 3895487 19 + TSS region transcription start site region 112529
Tssr112530 12 3897384 to 3897396 12 + TSS region transcription start site region 112530
Tssr112531 12 3897405 to 3897436 31 + TSS region transcription start site region 112531
Tssr112532 12 3904188 to 3904200 12 + TSS region transcription start site region 112532
Tssr112533 12 3905352 to 3905353 1 + TSS region transcription start site region 112533
Tssr112534 12 3906808 to 3906821 13 + TSS region transcription start site region 112534
Tssr112535 12 3907602 to 3907619 17 + TSS region transcription start site region 112535
Tssr112536 12 3907673 to 3907705 32 + TSS region transcription start site region 112536
Tssr112537 12 3907746 to 3907766 20 + TSS region transcription start site region 112537
Tssr115622 12 3907835 to 3907855 20 - TSS region transcription start site region 115622
Tssr112538 12 3908220 to 3908229 9 + TSS region transcription start site region 112538
Tssr112539 12 3913160 to 3913183 23 + TSS region transcription start site region 112539
Tssr112540 12 3913394 to 3913414 20 + TSS region transcription start site region 112540
D12Mit1000 12 3917243 to 3917392 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1000
Cpgi4366 12 3930101 to 3930276 175 CpG island CpG island 4366
Cpgi4367 12 3930584 to 3931055 471 CpG island CpG island 4367
Gm9088 12 3931533 to 3932040 507 - pseudogene predicted gene 9088
Cpgi4368 12 3942308 to 3942783 475 CpG island CpG island 4368
Cpgi4369 12 3954642 to 3954964 322 CpG island CpG island 4369
Tssr112541 12 3954943 to 3954957 14 + TSS region transcription start site region 112541
Pomc 12 3954951 to 3960642 5691 + protein coding gene pro-opiomelanocortin-alpha
Cpgi4370 12 3959730 to 3960521 791 CpG island CpG island 4370
Tssr112542 12 3959996 to 3960061 65 + TSS region transcription start site region 112542
Tssr115623 12 3960439 to 3960482 43 - TSS region transcription start site region 115623
Efr3b 12 3962554 to 4038915 76361 - protein coding gene EFR3 homolog B
Tssr115624 12 3972869 to 3972877 8 - TSS region transcription start site region 115624