Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:35935079-36295671

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Agr3 12 35925621 to 35949737 24116 + protein coding gene anterior gradient 3
Tssr113228 12 35992900 to 35992917 17 + TSS region transcription start site region 113228
Agr2 12 35992925 to 36004081 11156 + protein coding gene anterior gradient 2
Tspan13 12 36014555 to 36042478 27923 - protein coding gene tetraspanin 13
Tssr116131 12 36019675 to 36019693 18 - TSS region transcription start site region 116131
Tssr113229 12 36020527 to 36020546 19 + TSS region transcription start site region 113229
Tssr116132 12 36020562 to 36020596 34 - TSS region transcription start site region 116132
Tssr116133 12 36039550 to 36039566 16 - TSS region transcription start site region 116133
Cpgi4558 12 36041780 to 36042831 1051 CpG island CpG island 4558
Tssr116134 12 36042451 to 36042462 11 - TSS region transcription start site region 116134
Tssr116135 12 36042476 to 36042516 40 - TSS region transcription start site region 116135
Gm5434 12 36090379 to 36091829 1450 + pseudogene predicted gene 5434
Bzw2 12 36091835 to 36156825 64990 - protein coding gene basic leucine zipper and W2 domains 2
Gm18115 12 36115079 to 36115671 592 + pseudogene predicted gene, 18115
Gm48369 12 36146183 to 36147922 1739 - unclassified gene predicted gene, 48369
Cpgi4559 12 36156206 to 36158260 2054 CpG island CpG island 4559
Tssr116136 12 36156724 to 36156735 11 - TSS region transcription start site region 116136
Tssr116137 12 36156747 to 36156776 29 - TSS region transcription start site region 116137
Tssr116138 12 36156781 to 36156815 34 - TSS region transcription start site region 116138
Tssr113230 12 36157122 to 36157133 11 + TSS region transcription start site region 113230
Ankmy2 12 36157124 to 36197291 40167 + protein coding gene ankyrin repeat and MYND domain containing 2
Tssr113231 12 36157167 to 36157238 71 + TSS region transcription start site region 113231
Gm19046 12 36172368 to 36173662 1294 + pseudogene predicted gene, 19046
Tssr113232 12 36196644 to 36196648 4 + TSS region transcription start site region 113232
Lrrc72 12 36208345 to 36253398 45053 - protein coding gene leucine rich repeat containing 72
Cpgi4560 12 36208477 to 36208759 282 CpG island CpG island 4560
1700101O05Rik 12 36212310 to 36212434 124 unclassified gene RIKEN cDNA 1700101O05 gene
Tssr116139 12 36218172 to 36218187 15 - TSS region transcription start site region 116139
Tssr116140 12 36218188 to 36218205 17 - TSS region transcription start site region 116140
Gm40390 12 36249901 to 36253763 3862 + lncRNA gene predicted gene, 40390
Tssr116141 12 36253396 to 36253425 29 - TSS region transcription start site region 116141
Gm40392 12 36264963 to 36291019 26056 + lincRNA gene predicted gene, 40392